Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h14
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47770.1 68415.m05963 benzodiazepine receptor-related contain...    51   7e-07
At1g13540.1 68414.m01587 expressed protein                             30   2.0  
At2g23610.1 68415.m02817 esterase, putative similar to ethylene-...    29   2.6  
At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr...    29   2.6  
At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /...    28   6.0  
At5g16010.1 68418.m01872 3-oxo-5-alpha-steroid 4-dehydrogenase f...    28   6.0  
At4g08878.1 68417.m01463 inorganic phosphate transporter, putati...    28   6.0  
At1g71890.1 68414.m08311 sucrose transporter / sucrose-proton sy...    28   7.9  
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi...    28   7.9  
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi...    28   7.9  

>At2g47770.1 68415.m05963 benzodiazepine receptor-related contains
           weak similarity to Peripheral-type benzodiazepine
           receptor (PBR) (PKBS) (Mitochondrial benzodiazepine
           receptor) (Swiss-Prot:P30536) [Homo sapiens]
          Length = 196

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 32/114 (28%), Positives = 47/114 (41%)
 Frame = +3

Query: 210 KKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTP 389
           K  SW PP W+           MG A++L+W   DG        L LY  Q LL   W P
Sbjct: 79  KSSSWIPPLWLLHTTCLASSGLMGLAAWLVW--VDGGFHKKPNALYLYLAQFLLCLVWDP 136

Query: 390 IFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWLGYASSLS 551
           + F +             S A      +F  ++  AG L+ P LAW  + ++++
Sbjct: 137 VTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVN 190


>At1g13540.1 68414.m01587 expressed protein 
          Length = 381

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/76 (22%), Positives = 33/76 (43%)
 Frame = +3

Query: 171 RKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDGFTEDAVLPLTL 350
           +K+ S + +Y     P   PP ++    WTV YS   +  + + ++  G   +    L L
Sbjct: 150 QKEPSSRCYYATSVAPDGVPPWFLRKKEWTVEYSR--FQDFELRDDAKGLITELRTELPL 207

Query: 351 YGVQLLLNWSWTPIFF 398
            G+  ++   + P  F
Sbjct: 208 LGMSTVVGKWYVPFIF 223


>At2g23610.1 68415.m02817 esterase, putative similar to
           ethylene-induced esterase [Citrus sinensis] GI:14279437,
           polyneuridine aldehyde esterase [Rauvolfia serpentina]
           GI:6651393; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 263

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 153 FFAGQIRKDNSEKSWYDEL---KKPSWTPPKWVFGP 251
           F   ++RK+ S + W D +   +KP +    W+FGP
Sbjct: 121 FVWDKLRKETSREEWLDTVFTSEKPDFPSEFWIFGP 156


>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 901

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 198 TRTFHC-CLYGFDPQRTVHWPIHRHLGG*SNRVQA 97
           ++TF C CL GF+P+   HW +    GG + + +A
Sbjct: 369 SKTFECTCLPGFEPKFPRHWFLRDSSGGCTKKKRA 403


>At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 449

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 284 ISHAAVENSPSWTKYPLWGS 225
           +SH  ++NSP WT +P++ S
Sbjct: 195 VSHVVLQNSPFWTLHPVYCS 214


>At5g16010.1 68418.m01872 3-oxo-5-alpha-steroid 4-dehydrogenase
           family protein / steroid 5-alpha-reductase family
           protein similar to steroid 5alpha-reductase - Rattus
           norvegicus, PIR:A34239 [SP|24008]; contains Pfam
           3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
          Length = 268

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +3

Query: 342 LTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYL 521
           +++ GV  L N  W+ I    +   L + +  V S +       FGS++   G+LL+   
Sbjct: 20  MSVVGVAALANIGWSEI----RGNHLKYSKFGVSSSSPQPQKERFGSISSRNGMLLLYTP 75

Query: 522 AWLGYASS 545
           A+L  ASS
Sbjct: 76  AFLAAASS 83


>At4g08878.1 68417.m01463 inorganic phosphate transporter, putative
           similar to inorganic phosphate transporter (GI:3869190)
           [Arabidopsis thaliana]
          Length = 280

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +3

Query: 390 IFFGLKDFKLAF-----IEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWLGYASSLSY 554
           IFFG    KL       + + +++  ++A++LSFG   KT  + L  +  WLG+     Y
Sbjct: 68  IFFGCLGDKLGRKRVYGLTLLIMTICSIASSLSFGKDPKTVMVTLCFFRFWLGFGIGGDY 127


>At1g71890.1 68414.m08311 sucrose transporter / sucrose-proton
           symporter (SUC5) nearly identical to sucrose transporter
           [Arabidopsis thaliana] GI:12057172
          Length = 512

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 438 VLSGAAVATTLSFGSVNKTAGLLLIPYLAWLGYASSLSYYIWKNNP 575
           ++S A++A  + FG   + +  LL PY+  LG     S Y+W   P
Sbjct: 34  IISVASIAAGVQFGWALQLS--LLTPYIQLLGIPHKWSSYMWLCGP 77


>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 147 GLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDG 317
           G    G++ K    K   D+  +PS  P      PA  +   S+ YAS ++ EE +G
Sbjct: 69  GCILPGEVTKPVVPKK-VDDFGRPSLLPQHVSSSPALPLKSHSVNYASTVVREEVEG 124


>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 147 GLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDG 317
           G    G++ K    K   D+  +PS  P      PA  +   S+ YAS ++ EE +G
Sbjct: 69  GCILPGEVTKPVVPKK-VDDFGRPSLLPQHVSSSPALPLKSHSVNYASTVVREEVEG 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,141,510
Number of Sequences: 28952
Number of extensions: 391917
Number of successful extensions: 1032
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)