Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h12
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280...    29   3.1  
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432...    29   4.1  
10_08_0791 - 20590744-20591211,20591379-20591439,20591525-205915...    28   7.2  
01_05_0361 + 21377080-21377281,21378619-21378705,21379862-213801...    28   7.2  
11_01_0031 + 248264-248513,248519-249007,249178-249445,249631-24...    27   9.5  
07_01_0655 - 4910497-4911972,4912035-4912415                           27   9.5  

>06_01_0390 +
           2802334-2802339,2802461-2802618,2802755-2802826,
           2802967-2803114,2803234-2803503,2803741-2803904,
           2804184-2804236,2804302-2804496,2804597-2804694,
           2804787-2804891
          Length = 422

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 170 FILG-YLTM-FTNVYNTGLLITLT-NYIGAGSHSFDRTTSFDSIDL 298
           FI G Y+ + F N  N+ L I LT NYI A S S   T +FD ID+
Sbjct: 75  FIYGSYIGLHFANENNSFLAIKLTVNYIIAASSSNIYTKTFDGIDV 120


>09_03_0042 +
           11842263-11842698,11842799-11842896,11843082-11843217,
           11843349-11843509,11843603-11843753,11843855-11843952,
           11844142-11844277,11844404-11844532,11844622-11844720,
           11844814-11844909,11845002-11845100,11845201-11845296,
           11846394-11846628,11846752-11846873,11846993-11847114,
           11847275-11847345,11847940-11848027,11848374-11848439,
           11848676-11848795
          Length = 852

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = +2

Query: 173 ILGYLTMFTNVYNTGLLITLTNYIGAGSH-SFD-----RTTSFDSIDLEELSEPTTTLQP 334
           +L  L + T      +  TL + +   +H ++D     R T+FDS++L+ +  PT+ +  
Sbjct: 620 VLACLNLETLQPRNSICTTLQSELSGSAHPTYDHQTVMRPTTFDSLELDMVDTPTSDVSN 679

Query: 335 AQQSSE 352
           A++ S+
Sbjct: 680 AKEQSQ 685


>10_08_0791 -
           20590744-20591211,20591379-20591439,20591525-20591592,
           20592015-20592188,20592291-20592331,20592571-20592620,
           20593083-20593171,20593250-20593324,20593631-20593719,
           20593895-20593955,20594111-20594227,20594465-20594667,
           20594785-20594842,20594951-20595103
          Length = 568

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -1

Query: 465 PGRLLCSPTTQAMLTSNHAAFITIVIRSTNPTPLRRGDS 349
           P RLL  PT Q  L +  A     V  +  PTP  R DS
Sbjct: 516 PTRLLIPPTKQRSLDAGRAEVRVDVDSTPTPTPPERHDS 554


>01_05_0361 +
           21377080-21377281,21378619-21378705,21379862-21380134,
           21380304-21380378,21380470-21380550,21380837-21381034,
           21381145-21381234,21381310-21381467,21381619-21381741,
           21381891-21382034,21382175-21382285,21382583-21382624,
           21383043-21383261,21385319-21385627
          Length = 703

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 392 TIVINAAWLLVNIACVVGLHRRRPGNI 472
           +++ +AA    ++AC+VGL R+  GN+
Sbjct: 535 SLISDAASRTASLACIVGLSRKEDGNL 561


>11_01_0031 +
           248264-248513,248519-249007,249178-249445,249631-249718
          Length = 364

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 164 GCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFDRT-TSF 283
           GC  LG     TN+  T +LIT+T Y    S+ F  + TSF
Sbjct: 60  GC-CLGLADPVTNIILTTILITITTYSRKKSYGFSMSHTSF 99


>07_01_0655 - 4910497-4911972,4912035-4912415
          Length = 618

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +2

Query: 395 IVINAAWLLVNIACVVGLHRRRPGNIKFYVLFAACRLVLVFAGLVYLTMTITTPAL 562
           + +N      N+A VVG         ++  + A C  V  F G+V LTMT   PAL
Sbjct: 88  VALNVFAGTTNLATVVGAFASDLYLGRYATVAAGC--VSTFIGMVILTMTAGVPAL 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,445,883
Number of Sequences: 37544
Number of extensions: 337817
Number of successful extensions: 958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)