Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h10
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_47685| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_33563| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17)          29   3.4  
SB_28399| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_26334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_20797| Best HMM Match : SoxE (HMM E-Value=0.046)                    29   3.4  
SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_8890| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_4852| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)                   28   4.5  
SB_24014| Best HMM Match : Metallophos (HMM E-Value=8.5)               28   4.5  
SB_15312| Best HMM Match : EGF (HMM E-Value=7.1e-21)                   28   5.9  
SB_51327| Best HMM Match : DMA (HMM E-Value=0.00024)                   27   7.8  

>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
           TT+GSTC D      CT++G  +R  LD
Sbjct: 39  TTLGSTCADSGITSSCTQLGQGERRSLD 66


>SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 311 SRVQTRPLYTSYFCTNLLGSAI*ASTTDGGARSPLRVPGSGCDP 180
           +RV+  P++ +Y C N+  SAI  +  +  AR+   VP  G  P
Sbjct: 541 ARVKEGPVFNAYACANMYQSAIFTAKVEIRARAITDVPKEGRFP 584


>SB_47685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
           T++GSTC D      CT++G  +R  LD
Sbjct: 30  TSLGSTCADSGITSSCTQLGQGERRSLD 57


>SB_33563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
           T++GSTC D      CT++G  +R  LD
Sbjct: 8   TSLGSTCADSGITSSCTQLGQGERRSLD 35


>SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17)
          Length = 380

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
           T++GSTC D      CT++G  +R  LD
Sbjct: 8   TSLGSTCADSGITSSCTQLGQGERRSLD 35


>SB_28399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
           T++GSTC D      CT++G  +R  LD
Sbjct: 8   TSLGSTCADSGITSSCTQLGQGERRSLD 35


>SB_26334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
           T++GSTC D      CT++G  +R  LD
Sbjct: 8   TSLGSTCADSGITSSCTQLGQGERRSLD 35


>SB_20797| Best HMM Match : SoxE (HMM E-Value=0.046)
          Length = 641

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 399 KRSVLQMHQRPVHILQRG*RSILRGCSKEESGPDTPS 289
           K + ++++  P+HI      + +R CSK+ S PDT S
Sbjct: 488 KETEVKLNGGPLHITHTDTVNTIRECSKDMSDPDTNS 524


>SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
           T++GSTC D      CT++G  +R  LD
Sbjct: 153 TSLGSTCADSGITSSCTQLGQGERRSLD 180


>SB_8890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
           T++GSTC D      CT++G  +R  LD
Sbjct: 30  TSLGSTCADSGITSSCTQLGQGERRSLD 57


>SB_4852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
           T++GSTC D      CT++G  +R  LD
Sbjct: 8   TSLGSTCADSGITSSCTQLGQGERRSLD 35


>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
          Length = 896

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 284 TSYFCTNLLGSAI*ASTTDGGARSPLRVPGSGCD-PWRYPRVDCAIVPA--SPT 132
           TSY C + L      S T       L +P   CD P RYP VD  I+P   SPT
Sbjct: 450 TSYPCVDALAIPQCDSPTRYPCLDALTIPQ--CDSPTRYPYVDALIIPQCDSPT 501


>SB_24014| Best HMM Match : Metallophos (HMM E-Value=8.5)
          Length = 252

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 233 TDGGARSPLRVPGSGCDPW 177
           T GGA+ P   PG G  PW
Sbjct: 32  TSGGAKDPSGAPGDGFHPW 50


>SB_15312| Best HMM Match : EGF (HMM E-Value=7.1e-21)
          Length = 77

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 213 APCTTIGSTCLDCTTKQVCTKVGGIQRACLDPTLPYCNLGEC 338
           +PC   G+TC+D   K  CT  GG      +  +  C    C
Sbjct: 8   SPCQN-GATCVDGINKYTCTCAGGYTGTHCETDINECASSPC 48


>SB_51327| Best HMM Match : DMA (HMM E-Value=0.00024)
          Length = 236

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 115 PPVVPAVGEAGTMAQSTLGYLHGSHPLPGTRSGLLAPPSVV 237
           PPV+P+ GE GTM    +  L+  + + G    L+ PP ++
Sbjct: 102 PPVIPSSGEPGTM-NPLIPPLYKMNYMNGQYRFLMPPPGMM 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,966,606
Number of Sequences: 59808
Number of extensions: 335222
Number of successful extensions: 1087
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)