Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10h08
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 164 1e-41
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 30 0.28
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 2.0
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.0
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 2.6
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 4.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 6.1
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.0
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 164 bits (399), Expect = 1e-41
Identities = 81/196 (41%), Positives = 125/196 (63%), Gaps = 6/196 (3%)
Frame = +2
Query: 2 LEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQI 181
LE+L+RLN+ YPM+F N+ +++ TH GVLEF+A+EGRVYLP+WMM L LE G L+++
Sbjct: 65 LEKLSRLNVSYPMLFDFENEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRV 124
Query: 182 ESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVL 361
+ + ++ K QP S +FLDIT+ +AVLEN LRNFS LT D+ I YN +VY++ V+
Sbjct: 125 INTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVI 184
Query: 362 ETKPGNA---VIIIECDMNVEFAPPVGYKEQ-DHVSRSNDGAVEG--MDEDPAAMMPESS 523
+ +P ++ V ++E D+ V+F PP+GY+E + N V+G + + +
Sbjct: 185 DVQPDDSRHVVSVVETDLVVDFDPPIGYEESLQKNKQQNIAGVQGTMVTKIGYDELVRQG 244
Query: 524 GFRAFSGEGNRLDGKK 571
G G +L+GK+
Sbjct: 245 DSNLMKGTGTKLNGKE 260
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 30.3 bits (65), Expect = 0.28
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -3
Query: 309 PVVKHEKLRKQFSNTAFGFVMSKKSSDKGWNLENVATGSDTLSICIKAPSSRTRF 145
P + ++ L +FS+ F F+ +K + + +N+ SD + IK P++ T F
Sbjct: 177 PTLLYKSLSNEFSSLPFSFMPAKANVNDLFNISAYVDTSDLPILFIKHPNNGTSF 231
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 536 FSGEGNRLDGKKKKLISESDSEPGTSQPRQSYV 634
FS E + DGK + +SES S GTS S V
Sbjct: 3 FSAEQAKKDGKDQSPVSESSSVGGTSPATASSV 35
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 581 ISESDSEPGTSQPRQSYVRGIPDYDFVIGTLRFIRN 688
IS S S+P +S P S + PD DF F+++
Sbjct: 137 ISSSSSDPSSSPPPSSSLLKTPDNDFCARPETFVKS 172
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/64 (28%), Positives = 23/64 (35%)
Frame = +2
Query: 437 KEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQ 616
++ D S S+D E ED + S S EG+ SES SE S
Sbjct: 124 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 183
Query: 617 PRQS 628
S
Sbjct: 184 SSSS 187
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/64 (28%), Positives = 23/64 (35%)
Frame = +2
Query: 437 KEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQ 616
++ D S S+D E ED + S S EG+ SES SE S
Sbjct: 178 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSS 237
Query: 617 PRQS 628
S
Sbjct: 238 SSSS 241
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +2
Query: 572 KKLISESDSEPGTSQPRQ 625
K+L+ E+DSEPGT PRQ
Sbjct: 7 KQLVPENDSEPGT--PRQ 22
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 203 ATFSKFQPLSEDFLDITNPKAVL 271
A SK P SEDF+DIT P +L
Sbjct: 491 ANSSKPIPDSEDFMDITRPFNIL 513
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 119 VYLPHWMMANLVLEEGALIQIESVSLPVAT 208
+YL W+ AN+ L + QIE +L T
Sbjct: 1121 IYLMPWIAANMDLAKNVQTQIEHTTLSTVT 1150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,156
Number of Sequences: 5004
Number of extensions: 59900
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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