Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h08
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2727| Best HMM Match : UFD1 (HMM E-Value=0)                        182   2e-46
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_8403| Best HMM Match : Tenui_NCP (HMM E-Value=1)                    30   1.6  
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)                     30   1.6  
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_46248| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_32470| Best HMM Match : BRE (HMM E-Value=0.98)                      29   4.9  
SB_22477| Best HMM Match : E-MAP-115 (HMM E-Value=0.7)                 29   4.9  
SB_4759| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)                 28   8.5  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               28   8.5  

>SB_2727| Best HMM Match : UFD1 (HMM E-Value=0)
          Length = 248

 Score =  182 bits (444), Expect = 2e-46
 Identities = 104/211 (49%), Positives = 129/211 (61%), Gaps = 14/211 (6%)
 Frame = +2

Query: 14  TRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQIESVS 193
           TRLNI YPM+FKLTN +  R THCGVLEFVADEG++YLPHW   + V      ++IE  S
Sbjct: 35  TRLNIVYPMLFKLTNNRIDRSTHCGVLEFVADEGKIYLPHWTSVD-VYHVSPTLEIERFS 93

Query: 194 LPVATFSKFQPLSEDFL---------DITNPKAV----LENCLRNFSCLTTGDVIAIKYN 334
                +     L+ + L         D  N +A     LEN LR+F+CLTTGD+IAIKYN
Sbjct: 94  PFADCYVMCSQLNNERLAPVLQKLAPDSRNSRAYLGASLENALRSFACLTTGDIIAIKYN 153

Query: 335 SKVYELCVLETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMP 514
            K+YE  V+ETKPG AV IIECDM VEFA PVGY E     +     V+ M+E+     P
Sbjct: 154 DKIYEFLVMETKPGKAVSIIECDMQVEFAAPVGYVE----PKRQQQQVKKMEEESEEPHP 209

Query: 515 ESSGFR-AFSGEGNRLDGKKKKLISESDSEP 604
            +   + AF+GEG RLDGKKKK+   S+  P
Sbjct: 210 AAQVTKLAFTGEGFRLDGKKKKMNVSSEPVP 240


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 248 ITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKPGNAV 385
           +++ K +LEN   +   L TG+++   Y     E+C+L   PG  V
Sbjct: 278 MSSGKELLENVTNSSLALVTGNILKFTYECDGSEICLLAKIPGRIV 323


>SB_8403| Best HMM Match : Tenui_NCP (HMM E-Value=1)
          Length = 424

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +2

Query: 131 HWMMANLVLEEGALIQIESVSLPVATFSKFQPLSE--DFLDITNPKAVLENCLRNFSCLT 304
           HW +     EE A ++I +    +A   +  PL E  D L    P  V E CLR++  L 
Sbjct: 222 HWRLLEKDYEERATMRILTYLEEMAWDYQRVPLDECCDGLKELQPSFVTEYCLRHYGKLC 281

Query: 305 TGDVIAIKYNSKVYELC 355
            G +  + Y+    ++C
Sbjct: 282 DGCMEEVHYHLLEDKIC 298


>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1568

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = -3

Query: 201 TGSDTLSICIKA--PSSRTRF-AIIQCGRYTLPSSATNSSTP 85
           T  +  S+ +KA   ++RTRF A  +CGR T+P  +T+S TP
Sbjct: 616 TYDNLCSLRLKACTDNTRTRFKAFGECGRTTVPPVSTSSPTP 657


>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/81 (27%), Positives = 34/81 (41%)
 Frame = +2

Query: 428  VGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPG 607
            VG   +  +   N G   G   D   +   S G +AF   G  LD  K   + E +  PG
Sbjct: 1400 VGEVRKIRIGHDNKGGFAGWFLDSVTINVPSLGQKAFFPCGRWLDKGKDDGLLERELLPG 1459

Query: 608  TSQPRQSYVRGIPDYDFVIGT 670
             ++  Q+Y   +P Y+  + T
Sbjct: 1460 EAEDVQAYRPHVP-YEITVYT 1479


>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2973

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 452 VSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDS 598
           V   NDG  +  D+D   +M +  G     G+G  + G   KL   +DS
Sbjct: 12  VGDGNDGDDDDGDDDGTVIMMDDDGEMVMGGDGGSVVGYNNKLQKATDS 60


>SB_46248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -3

Query: 315 TSPVVKHEKLRKQFSNTAFGFVMSKKSSDKGWNLENVATGSDTLSICIKAPSSRTRFAII 136
           TSP +K +KL+   +NT+FG   S    +    L  VA+ +  L     +   RTR A +
Sbjct: 56  TSPKMKVKKLKSLPANTSFGGQESVVEIESEERLRRVASANHALPSLATSTPPRTRRATL 115


>SB_32470| Best HMM Match : BRE (HMM E-Value=0.98)
          Length = 559

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 398 CDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSG 526
           CD+  E     G  E D+     DGA + +D+DPA    +  G
Sbjct: 497 CDLCPEEEQEEGECEADNGDTPEDGAEQALDQDPAPPPDDEQG 539


>SB_22477| Best HMM Match : E-MAP-115 (HMM E-Value=0.7)
          Length = 569

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +2

Query: 428 VGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPG 607
           V  ++++  S + +GA EG  ED   + PES G R+ SG      G  ++L S  +    
Sbjct: 173 VDRRDENKGSGAEEGAPEGRGEDKRCITPESRG-RSESGPEKH--GGVEQLESVRELVQQ 229

Query: 608 TSQPRQSYVRGI-PD 649
           T++ R  ++ G+ PD
Sbjct: 230 TAKQRWVHMDGLEPD 244


>SB_4759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +2

Query: 443 QDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQPR 622
           ++ V ++N    E  D D A+ + +S    + SG  +R+D + +    + DSE   S+  
Sbjct: 24  ENGVCKNNADLEEESDTDAASNV-KSDEMSSVSGTESRIDSESESEDGDYDSEEKESESE 82

Query: 623 QSYVRG-IPDY 652
           +   +G IP++
Sbjct: 83  EQQAKGEIPEH 93


>SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 443 QDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQPR 622
           ++ V ++N    E  D D A+ +       + SG  +R+D + +    + DSE   S+  
Sbjct: 16  ENGVCKNNADLEEESDTDTASNVKSDEDMSSVSGTESRIDSEIESEDGDYDSEEKESESE 75

Query: 623 QSYVRG-IPDY 652
           +    G IP++
Sbjct: 76  KQEAEGEIPEH 86


>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
          Length = 592

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/89 (25%), Positives = 37/89 (41%)
 Frame = +2

Query: 362 ETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFS 541
           ETKP   V   + D +     P   K++D    +ND   E   EDP    P+        
Sbjct: 513 ETKPDETVPSEQEDSSA--VEPTEAKDEDDTEEANDAGKETATEDP----PKKE------ 560

Query: 542 GEGNRLDGKKKKLISESDSEPGTSQPRQS 628
            E ++  G++      SD +P   QP+++
Sbjct: 561 -EDHQPSGEQPSDEQPSDEQPSDEQPKET 588


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 313 CHRYKVQLKSLRAVCPGDQTRECCHHYRVRYEC--RICSTSRV*GTR 447
           C     + K+    CPG+Q R  C   + R  C  R CS     GTR
Sbjct: 411 CLTMSCKAKNCDQECPGNQCRMACTSDKCRQVCAGRSCSMECARGTR 457


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,881,944
Number of Sequences: 59808
Number of extensions: 460545
Number of successful extensions: 1044
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)