Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10h08
(707 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 famil... 209 2e-54
At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 famil... 209 2e-54
At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 famil... 207 6e-54
At4g38930.2 68417.m05517 ubiquitin fusion degradation UFD1 famil... 198 2e-51
At4g38930.1 68417.m05516 ubiquitin fusion degradation UFD1 famil... 196 1e-50
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi... 91 7e-19
At1g70820.1 68414.m08169 phosphoglucomutase, putative / glucose ... 31 0.57
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr... 30 1.3
At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma mem... 28 5.3
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ... 28 5.3
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 28 5.3
At2g02610.1 68415.m00200 DC1 domain-containing protein contain... 28 5.3
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 27 9.2
At3g46700.1 68416.m05070 UDP-glucoronosyl/UDP-glucosyl transfera... 27 9.2
>At2g29070.2 68415.m03533 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 312
Score = 209 bits (510), Expect = 2e-54
Identities = 108/240 (45%), Positives = 156/240 (65%), Gaps = 7/240 (2%)
Frame = +2
Query: 2 LEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQI 181
L++L L+IEYPM+F+L+N ++ +HCGVLEF ADEG VYLP+WMM N+ LEEG ++Q+
Sbjct: 38 LDRLASLHIEYPMLFQLSNVSVEKTSHCGVLEFTADEGLVYLPYWMMQNMSLEEGDVMQV 97
Query: 182 ESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVL 361
+++SL T+ K QP ++DFLDI+NPKA+LE LR++SCLTTGD I + YN+K Y + V+
Sbjct: 98 KNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKQYYINVV 157
Query: 362 ETKPGNAVIIIECDMNVEFAPPVGYKEQD---HVSRSNDGAVE-GMDEDPAAMMPESSGF 529
E KP +AV IIE D V+FAPP+ YKE + ++ SN ++ +E+PA+ +P+ F
Sbjct: 158 EAKPSSAVSIIETDCEVDFAPPLDYKEPEKPQKLTPSNKRPLQVKEEEEPASKVPK---F 214
Query: 530 RAFSGEGNRLDGKKKKLISESDS---EPGTSQPRQSYVRGIPDYDFVIGTLRFIRNSRPA 700
F+G G RLDGK + D+ E T + + + G L F NS+ A
Sbjct: 215 TPFTGSGKRLDGKAQTQTEPEDTKQQEKPTENGKDDEKLSVTTPRQISGKLVFGSNSKSA 274
>At2g29070.1 68415.m03534 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 280
Score = 209 bits (510), Expect = 2e-54
Identities = 108/240 (45%), Positives = 156/240 (65%), Gaps = 7/240 (2%)
Frame = +2
Query: 2 LEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQI 181
L++L L+IEYPM+F+L+N ++ +HCGVLEF ADEG VYLP+WMM N+ LEEG ++Q+
Sbjct: 6 LDRLASLHIEYPMLFQLSNVSVEKTSHCGVLEFTADEGLVYLPYWMMQNMSLEEGDVMQV 65
Query: 182 ESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVL 361
+++SL T+ K QP ++DFLDI+NPKA+LE LR++SCLTTGD I + YN+K Y + V+
Sbjct: 66 KNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKQYYINVV 125
Query: 362 ETKPGNAVIIIECDMNVEFAPPVGYKEQD---HVSRSNDGAVE-GMDEDPAAMMPESSGF 529
E KP +AV IIE D V+FAPP+ YKE + ++ SN ++ +E+PA+ +P+ F
Sbjct: 126 EAKPSSAVSIIETDCEVDFAPPLDYKEPEKPQKLTPSNKRPLQVKEEEEPASKVPK---F 182
Query: 530 RAFSGEGNRLDGKKKKLISESDS---EPGTSQPRQSYVRGIPDYDFVIGTLRFIRNSRPA 700
F+G G RLDGK + D+ E T + + + G L F NS+ A
Sbjct: 183 TPFTGSGKRLDGKAQTQTEPEDTKQQEKPTENGKDDEKLSVTTPRQISGKLVFGSNSKSA 242
>At2g21270.1 68415.m02532 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 319
Score = 207 bits (505), Expect = 6e-54
Identities = 92/189 (48%), Positives = 135/189 (71%)
Frame = +2
Query: 2 LEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQI 181
L++L L+I+YPM+F+L N +R+THCGVLEF+A+EG +Y+P+WMM NL+L+EG ++++
Sbjct: 43 LDRLASLHIDYPMLFELRNAGIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRV 102
Query: 182 ESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVL 361
+V+LP T+ K QP + DFLDI+NPKA+LE LRN+SCLT+GD I + YN+K Y + ++
Sbjct: 103 RNVTLPKGTYVKLQPHTTDFLDISNPKAILETALRNYSCLTSGDSIMVPYNNKKYFIDIV 162
Query: 362 ETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFS 541
ETKP NA+ IIE D V+FAPP+ YKE + + + A +G + + F F+
Sbjct: 163 ETKPANAISIIETDCEVDFAPPLDYKEPERPTAPS--AAKGPAKAEEVVDEPEPKFNPFT 220
Query: 542 GEGNRLDGK 568
G G RLDG+
Sbjct: 221 GSGRRLDGR 229
>At4g38930.2 68417.m05517 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 315
Score = 198 bits (484), Expect = 2e-51
Identities = 90/191 (47%), Positives = 128/191 (67%), Gaps = 2/191 (1%)
Frame = +2
Query: 2 LEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQI 181
L++L L I+YPM+F+L N + +HCGVLEF+A+EG +Y+P+WMM NL+L+EG ++++
Sbjct: 43 LDRLASLQIDYPMLFELRNASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRV 102
Query: 182 ESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVL 361
+V+LP T+ K QP + DFLDI NPKA+LE LRN+SCLT GD I + YN+K Y + ++
Sbjct: 103 RNVTLPKGTYVKLQPHTTDFLDIANPKAILETALRNYSCLTVGDSIMVPYNNKKYFIDIV 162
Query: 362 ETKPGNAVIIIECDMNVEFAPPVGYKEQDH--VSRSNDGAVEGMDEDPAAMMPESSGFRA 535
E KP N + IIE D V+FAPP+ YKE + G + + D A P+ F
Sbjct: 163 EAKPSNGISIIETDCEVDFAPPLDYKEPERPVAPAPAKGEAKAKEVDVAEAEPK---FNP 219
Query: 536 FSGEGNRLDGK 568
F+G G RLDG+
Sbjct: 220 FTGSGRRLDGR 230
>At4g38930.1 68417.m05516 ubiquitin fusion degradation UFD1 family
protein similar to SP|P70362 Ubiquitin fusion
degradation protein 1 homolog (UB fusion protein 1) {Mus
musculus}; contains Pfam profile PF03152: Ubiquitin
fusion degradation protein UFD1
Length = 311
Score = 196 bits (478), Expect = 1e-50
Identities = 89/189 (47%), Positives = 127/189 (67%)
Frame = +2
Query: 2 LEQLTRLNIEYPMIFKLTNKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGALIQI 181
L++L L I+YPM+F+L N + +HCGVLEF+A+EG +Y+P+WMM NL+L+EG ++++
Sbjct: 43 LDRLASLQIDYPMLFELRNASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRV 102
Query: 182 ESVSLPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVL 361
+V+LP T+ K QP + DFLDI NPKA+LE LRN+SCLT GD I + YN+K Y + ++
Sbjct: 103 RNVTLPKGTYVKLQPHTTDFLDIANPKAILETALRNYSCLTVGDSIMVPYNNKKYFIDIV 162
Query: 362 ETKPGNAVIIIECDMNVEFAPPVGYKEQDHVSRSNDGAVEGMDEDPAAMMPESSGFRAFS 541
E KP N + IIE D V+FAPP+ YKE + + + D A P+ F F+
Sbjct: 163 EAKPSNGISIIETDCEVDFAPPLDYKEPERPVA--PAPAKAKEVDVAEAEPK---FNPFT 217
Query: 542 GEGNRLDGK 568
G G RLDG+
Sbjct: 218 GSGRRLDGR 226
>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
to PRLI-interacting factor K [Arabidopsis thaliana]
GI:11139266; contains Pfam profiles PF03152: Ubiquitin
fusion degradation protein UFD1, PF00096: Zinc finger,
C2H2 type
Length = 561
Score = 91.1 bits (216), Expect = 7e-19
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Frame = +2
Query: 35 PMIFKLT---NKKSKRLTHCGVLEFVADEGRVYLPHWMMANLVLEEGA----LIQIESVS 193
P+ F+L+ + +K+ TH GVLEF A++G + LP + +NL L++I +
Sbjct: 114 PLYFELSVVDHADNKKTTHSGVLEFTAEDGTIGLPPHVWSNLFSTHDPMDVPLVEIRYIR 173
Query: 194 LPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKVYELCVLETKP 373
LP +++K QP + F D+ N KA+LE LR + L+ DV+ + Y Y+L VLE +P
Sbjct: 174 LPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATLSLDDVLLVNYGQVSYKLQVLELRP 233
Query: 374 GNAVIIIECDMNVEFAPP 427
++ ++E D+ V+ P
Sbjct: 234 ATSISVLETDIEVDIVSP 251
>At1g70820.1 68414.m08169 phosphoglucomutase, putative / glucose
phosphomutase, putative similar to phosphoglucomutase
GI:534981 from [Spinacia oleracea], phosphomannomutase
[Pseudomonas aeruginosa] GI:150994; contains InterPro
accession IPR006352: Phosphoglucosamine mutase
Length = 615
Score = 31.5 bits (68), Expect = 0.57
Identities = 27/90 (30%), Positives = 42/90 (46%)
Frame = -3
Query: 420 ANSTFISHSIMMTAFPGLVSRTHSS*TFELYFIAMTSPVVKHEKLRKQFSNTAFGFVMSK 241
A+ T IS + + ++ PG+VSR S TF A SP VK ++R + T F V +
Sbjct: 11 ASKTVISKTALFSSLPGIVSR--SFLTF-----APASPSVKPLRIRSS-NVTKFDEVTNS 62
Query: 240 KSSDKGWNLENVATGSDTLSICIKAPSSRT 151
D + + GSD + ++ RT
Sbjct: 63 LDEDMD-QIRRLQNGSDVRGVALEGEKGRT 91
>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
domains; weak similarity to HPSR2 - heavy chain
potential motor protein (GI:871048) [Giardia
intestinalis]
Length = 702
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 452 VSRSNDGAVEGMDEDPAAMMPESSGFRAFSGEGNRLDGKKKKLISESDSEPGTSQPRQS 628
V R VE + E+ + +SG + +G R KKKKL+ E S S QS
Sbjct: 15 VDRRAKSVVEDLSEEQNDLQLPASGRKG--SQGKRTSSKKKKLVKEESSNKRDSSGDQS 71
>At3g63380.1 68416.m07135 calcium-transporting ATPase, plasma
membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)
identical to SP|Q9LY77 Potential calcium-transporting
ATPase 12, plasma membrane-type (EC 3.6.3.8)
(Ca(2+)-ATPase isoform 12) {Arabidopsis thaliana};
similar to SP|Q9LF79 Calcium-transporting ATPase 8,
plasma membrane-type (EC 3.6.3.8) (Ca2+-ATPase, isoform
8) {Arabidopsis thaliana}; contains InterPro Accession
IPR006069: Cation transporting ATPase
Length = 1033
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 164 GALIQIESVSLPVATFSKFQPLSE-DFLD-ITNPKAVLE 274
G I + S+S P+ F+KF P+SE FL NP+++ +
Sbjct: 985 GTCIALASLSWPIGFFTKFIPVSETPFLSYFKNPRSLFK 1023
>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1703
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 350 LCVLETKPGNAVIIIECDMNVEFAP 424
+CV ET P N+V+II DMN+ P
Sbjct: 39 ICVRETSPQNSVVII--DMNMPMQP 61
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 311 DVIAIKYNSKVYELCVLETKPGNAVIIIECD 403
D+ + +K + CVL GN + +ECD
Sbjct: 357 DISGVYVGNKFCQACVLPINEGNIYVCVECD 387
>At2g02610.1 68415.m00200 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 311 DVIAIKYNSKVYELCVLETKPGNAVIIIECD 403
D+ + +K + CVL GN + +ECD
Sbjct: 357 DISGVFVGNKFCQACVLPINEGNVYVCVECD 387
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -3
Query: 222 WNLENVATGSDTLSICIKAPSSRTRFAIIQCGRYTLPSSA 103
W L+N G L C + P+ AI CG + + +A
Sbjct: 405 WRLQNFVLGEHILKPCPENPTPIKACAISACGNFAVVGTA 444
>At3g46700.1 68416.m05070 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 385
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +2
Query: 194 LPVATFSKFQPLSEDFLDITNPKAVLENCLRNFSCLTTGDVIAIKYNSKV 343
LP ATF + +P E D+ N + + +CL + + ++ ++
Sbjct: 113 LPTATFGELEPFLELCRDVVNKRTASAVIINTVTCLESSSLTRLQQELQI 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,198,163
Number of Sequences: 28952
Number of extensions: 316486
Number of successful extensions: 815
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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