Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10h07
(437 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical... 87 4e-18
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 36 0.010
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 36 0.010
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 36 0.010
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 31 0.28
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 31 0.37
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 31 0.37
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 31 0.48
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 31 0.48
Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 29 1.1
AF000263-15|AAG00018.1| 416|Caenorhabditis elegans Hypothetical... 29 1.1
AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily a... 29 2.0
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p... 28 2.6
U80436-3|AAL06029.3| 633|Caenorhabditis elegans Uncoordinated p... 28 2.6
U80436-2|AAC71110.1| 928|Caenorhabditis elegans Uncoordinated p... 28 2.6
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p... 28 2.6
AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical ... 28 2.6
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle... 28 2.6
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p... 27 4.5
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p... 27 4.5
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 27 4.5
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 27 4.5
AL117195-5|CAB55012.1| 732|Caenorhabditis elegans Hypothetical ... 27 4.5
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 27 6.0
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 27 6.0
>AC024859-18|AAK29974.1| 121|Caenorhabditis elegans Hypothetical
protein Y71H2AM.5 protein.
Length = 121
Score = 87.4 bits (207), Expect = 4e-18
Identities = 31/71 (43%), Positives = 45/71 (63%)
Frame = +3
Query: 117 LKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWD 296
L AP+D RFP + R C+ YVDFHRC ++ G+ Y+PC +F+ VY+ CP W ++WD
Sbjct: 48 LWAAPYDARFPQVRKQRQCFAYYVDFHRCNELMGQDYKPCKFFQNVYKDFCPGFWTERWD 107
Query: 297 NQRAEGTFAGR 329
+EG F +
Sbjct: 108 ELLSEGRFPAK 118
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 36.3 bits (80), Expect = 0.010
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +3
Query: 60 RNG*IIISNMPEM--IKSPADLKTAPFDP---RFPNQNQTRHCYQSYVDFHRCQKVRGEK 224
RNG + I + P+M I D K +DP + N +HCYQ+ +C + +K
Sbjct: 168 RNGSVTIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDK 227
Query: 225 Y--EPCYYFKRVYRSLCP 272
+RVYRS+CP
Sbjct: 228 CWGSGDNDCQRVYRSVCP 245
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 36.3 bits (80), Expect = 0.010
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +3
Query: 60 RNG*IIISNMPEM--IKSPADLKTAPFDP---RFPNQNQTRHCYQSYVDFHRCQKVRGEK 224
RNG + I + P+M I D K +DP + N +HCYQ+ +C + +K
Sbjct: 168 RNGSVTIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDK 227
Query: 225 Y--EPCYYFKRVYRSLCP 272
+RVYRS+CP
Sbjct: 228 CWGSGDNDCQRVYRSVCP 245
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 36.3 bits (80), Expect = 0.010
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +3
Query: 60 RNG*IIISNMPEM--IKSPADLKTAPFDP---RFPNQNQTRHCYQSYVDFHRCQKVRGEK 224
RNG + I + P+M I D K +DP + N +HCYQ+ +C + +K
Sbjct: 219 RNGSVTIQDNPKMCYIGDKIDWKELLYDPDVQKVETTNSHQHCYQNGKSMAKCHESCNDK 278
Query: 225 Y--EPCYYFKRVYRSLCP 272
+RVYRS+CP
Sbjct: 279 CWGSGDNDCQRVYRSVCP 296
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 31.5 bits (68), Expect = 0.28
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 163 RGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFR 336
RG K +A+K A A S+ + +SAP + + + T+SAP A +P R
Sbjct: 404 RGAPAKAAKAEAIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAP-ATAPEASR 460
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 31.1 bits (67), Expect = 0.37
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +1
Query: 112 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTS 291
PTS ++T S + T+T + TST A+ +T+ + +++ + ST+
Sbjct: 297 PTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTT 356
Query: 292 GTTSAPKAPSP 324
+TS P +P
Sbjct: 357 LSTSIPTTTTP 367
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 31.1 bits (67), Expect = 0.37
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +1
Query: 112 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTS 291
PTS ++T S + T+T + TST A+ +T+ + +++ + ST+
Sbjct: 297 PTSTSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSSSTITSSPSSTT 356
Query: 292 GTTSAPKAPSP 324
+TS P +P
Sbjct: 357 LSTSIPTTTTP 367
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 30.7 bits (66), Expect = 0.48
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 163 RGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFR 336
RG K +A+K A A S+ + +SAP + + + T+SAP A +P R
Sbjct: 382 RGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAP-ATAPEASR 438
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 30.7 bits (66), Expect = 0.48
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 115 TSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSG 294
+SK S S T T T +ST+ + +T H T+S+ +G ++P + S +G
Sbjct: 1406 SSKASSSPVPSQTSSTPTNPTGSTESSTLLSSTISGSTQHTTMSKASSGSTSPSTNSQTG 1465
Query: 295 TTSAPKAPSPVG 330
+T + S G
Sbjct: 1466 STVTMGSSSTSG 1477
>Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical
protein F47G4.4 protein.
Length = 722
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +1
Query: 106 RPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGS 285
R P+ ST S T R + V ++ +A ++ S +G +A S
Sbjct: 480 RTPSEGDVASTVSSSTSRNRRPSPSVAKKTSPPSIYAITSSPAKRASSTASGPTARRQNS 539
Query: 286 TSGTTSAPKAPSPVG 330
TS TS A +PVG
Sbjct: 540 TSSVTSTTSAKTPVG 554
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Frame = +1
Query: 112 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTS 291
PT+ ST + T T T T TST + T + + T + + +T+
Sbjct: 65 PTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPTTTTSTTTTTTTTTTTATPTTT 124
Query: 292 GTTSAPKAPSPV--GFRS*TFPML*FISICFN 381
TT P P+ V G P + FI + +N
Sbjct: 125 TTTMPPCNPNAVSLGMGDANNPQI-FIDVTYN 155
>AF000263-15|AAG00018.1| 416|Caenorhabditis elegans Hypothetical
protein T08B2.11 protein.
Length = 416
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 157 IRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKA 315
++ G AT+ S ++ T H ++ + LSA + G TSG APKA
Sbjct: 77 VKEGKATRRKEKSIEKKEHEQPKTTHR---KKKSSLSASLEGKTSGENEAPKA 126
>AF039037-5|AAC48228.3| 714|Caenorhabditis elegans Temporarily
assigned gene nameprotein 40 protein.
Length = 714
Score = 28.7 bits (61), Expect = 2.0
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 108 PADLKTAPFDPRFPNQNQTRH-CYQSYVDFHRCQ-KVRGEKYEPCYYFKRVYRSLCPNEW 281
P D P DPR+ N+N+ R+ + Y RCQ + G YF R + N W
Sbjct: 483 PTDYPLGPKDPRY-NENERRYDVWNYYNPLIRCQIYIMGLVLG---YFMRKVPKININPW 538
Query: 282 VDK 290
VD+
Sbjct: 539 VDR 541
>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
protein 73, isoform f protein.
Length = 2140
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 103 NRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSG 282
+RP S ST +RR A + A ++ N + AT R+ T S+P++
Sbjct: 1642 DRPDDSNASGSTVSKRKSLRRIFANSSKERAAAANSSSSNNNSPAT--RQSTSTSSPVTA 1699
Query: 283 STSGTTSAPKAP 318
+ T S+ AP
Sbjct: 1700 NGHTTESSTSAP 1711
>U80436-3|AAL06029.3| 633|Caenorhabditis elegans Uncoordinated
protein 73, isoform e protein.
Length = 633
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 103 NRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSG 282
+RP S ST +RR A + A ++ N + AT R+ T S+P++
Sbjct: 77 DRPDDSNASGSTVSKRKSLRRIFANSSKERAAAANSSSSNNNSPAT--RQSTSTSSPVTA 134
Query: 283 STSGTTSAPKAP 318
+ T S+ AP
Sbjct: 135 NGHTTESSTSAP 146
>U80436-2|AAC71110.1| 928|Caenorhabditis elegans Uncoordinated
protein 73, isoform c protein.
Length = 928
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 103 NRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSG 282
+RP S ST +RR A + A ++ N + AT R+ T S+P++
Sbjct: 82 DRPDDSNASGSTVSKRKSLRRIFANSSKERAAAANSSSSNNNSPAT--RQSTSTSSPVTA 139
Query: 283 STSGTTSAPKAP 318
+ T S+ AP
Sbjct: 140 NGHTTESSTSAP 151
>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
protein 73, isoform a protein.
Length = 2488
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 103 NRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSG 282
+RP S ST +RR A + A ++ N + AT R+ T S+P++
Sbjct: 1642 DRPDDSNASGSTVSKRKSLRRIFANSSKERAAAANSSSSNNNSPAT--RQSTSTSSPVTA 1699
Query: 283 STSGTTSAPKAP 318
+ T S+ AP
Sbjct: 1700 NGHTTESSTSAP 1711
>AF077534-3|AAC26290.1| 389|Caenorhabditis elegans Hypothetical
protein K07D4.6 protein.
Length = 389
Score = 28.3 bits (60), Expect = 2.6
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 112 PTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTS 291
P + + ST T T T TST + T+ +TIS T + P + +T+
Sbjct: 256 PGTTEETSTEPETTTTSTTTTEPTTTTSTTTQTTTTVPTSTSTISTTSTTTTTPTTTTTT 315
Query: 292 GTTS 303
+T+
Sbjct: 316 TSTT 319
Score = 27.5 bits (58), Expect = 4.5
Identities = 19/67 (28%), Positives = 25/67 (37%)
Frame = +1
Query: 103 NRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSG 282
+R P + +TH SLT + T T T T + T + P S
Sbjct: 237 DRIPLFRTTTTTHSSLTAVPGTTEETSTEPETTTTSTTTTEPTTTTSTTTQTTTTVPTST 296
Query: 283 STSGTTS 303
ST TTS
Sbjct: 297 STISTTS 303
>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
exchange factorUNC-73A protein.
Length = 2488
Score = 28.3 bits (60), Expect = 2.6
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 103 NRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSG 282
+RP S ST +RR A + A ++ N + AT R+ T S+P++
Sbjct: 1642 DRPDDSNASGSTVSKRKSLRRIFANSSKERAAAANSSSSNNNSPAT--RQSTSTSSPVTA 1699
Query: 283 STSGTTSAPKAP 318
+ T S+ AP
Sbjct: 1700 NGHTTESSTSAP 1711
>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 417 HILFY*ITSFDLIKTNRNKLKHWERLGSKSYRRRCLRRAGCPTCRPTHWG 268
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 136 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 181
>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 417 HILFY*ITSFDLIKTNRNKLKHWERLGSKSYRRRCLRRAGCPTCRPTHWG 268
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 177 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 222
>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
protein D2085.5b protein.
Length = 1007
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 417 HILFY*ITSFDLIKTNRNKLKHWERLGSKSYRRRCLRRAGCPTCRPTHWG 268
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 136 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 181
>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
protein D2085.5a protein.
Length = 1048
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 417 HILFY*ITSFDLIKTNRNKLKHWERLGSKSYRRRCLRRAGCPTCRPTHWG 268
H LF + D++ +KL+ + RR CLR C PT +G
Sbjct: 177 HFLF----ALDIVMIESSKLRLHPSISEVEVRRACLRALSSVICWPTTFG 222
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 175 TKVTWTSTVARKFAAKNTNHATISRE---CTGLSAPMSGSTSGTTSAPKAPS 321
TKVT TST T AT + E T AP + +T TT+ + P+
Sbjct: 310 TKVTPTSTTTEIPTTTTTEEATTTTEEITTTTTKAPTTTTTQSTTTTTQLPT 361
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 27.5 bits (58), Expect = 4.5
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 133 STHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPM--SGSTSGTTSA 306
+T GS G +T + ST +R + + +T S T S P SGST TTS
Sbjct: 545 TTSGSTQSTTSGPSTS-SGPSTASRSTVSTTSGPSTTSGPST-TSGPSTTSGSTKSTTSG 602
Query: 307 PKAPS 321
P S
Sbjct: 603 PSTTS 607
>AL117195-5|CAB55012.1| 732|Caenorhabditis elegans Hypothetical
protein Y57A10A.7 protein.
Length = 732
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 192 FHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDN 299
F+R ++ G YY+ R + + PN + KWDN
Sbjct: 29 FNRFAELDGAGLSHIYYYIRFHEHIAPN--IAKWDN 62
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = +1
Query: 220 KNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFRS*TFPML 357
+ +H+ + ++ + ++ AP APSP F FP L
Sbjct: 699 ETNHHSAVEKDAEKIKVRSPPVVVASSPAPAAPSPFSFEETAFPSL 744
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = +1
Query: 220 KNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFRS*TFPML 357
+ +H+ + ++ + ++ AP APSP F FP L
Sbjct: 601 ETNHHSAVEKDAEKIKVRSPPVVVASSPAPAAPSPFSFEETAFPSL 646
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,214,912
Number of Sequences: 27780
Number of extensions: 213757
Number of successful extensions: 716
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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