Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10h07
(437 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putati... 104 2e-23
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 99 1e-21
At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putati... 97 6e-21
At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family... 52 1e-07
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f... 29 1.0
At5g54010.1 68418.m06718 glycosyltransferase family protein cont... 29 1.4
At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase... 29 1.4
At4g00585.1 68417.m00082 expressed protein 29 1.8
At2g19010.1 68415.m02219 GDSL-motif lipase/hydrolase family prot... 29 1.8
At1g30490.1 68414.m03727 homeobox-leucine zipper transcription f... 29 1.8
At1g01240.3 68414.m00041 expressed protein 28 3.2
At1g01240.2 68414.m00040 expressed protein 28 3.2
At1g01240.1 68414.m00039 expressed protein 28 3.2
At5g55600.1 68418.m06932 agenet domain-containing protein / brom... 27 4.2
At5g44220.1 68418.m05410 F-box family protein similar to unknown... 27 4.2
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 27 4.2
At4g34390.1 68417.m04885 extra-large guanine nucleotide binding ... 27 5.5
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 27 5.5
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote... 27 7.3
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 27 7.3
At3g17205.1 68416.m02196 HECT-domain-containing protein / ubiqui... 27 7.3
At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to... 27 7.3
At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to... 27 7.3
At4g32880.1 68417.m04679 homeobox-leucine zipper transcription f... 26 9.7
At3g58820.1 68416.m06556 F-box family protein contains F-box dom... 26 9.7
>At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putative
similar to subunit 6b of cytochrome c oxidase
[Arabidopsis thaliana] gi|6518353|dbj|BAA87883
Length = 78
Score = 104 bits (250), Expect = 2e-23
Identities = 41/71 (57%), Positives = 50/71 (70%)
Frame = +3
Query: 114 DLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKW 293
+LKTAP D RFP NQTRHC+ Y++FHRC +GE+ C F + YR+LCP EWVDKW
Sbjct: 6 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKW 65
Query: 294 DNQRAEGTFAG 326
+ QR GTF G
Sbjct: 66 NEQRESGTFPG 76
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 98.7 bits (235), Expect = 1e-21
Identities = 39/70 (55%), Positives = 49/70 (70%)
Frame = +3
Query: 117 LKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWD 296
L+TAP D RFP NQTRHC+ YV++HRC +G+ C F + YRSLCP+EWVD+W+
Sbjct: 119 LETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWN 178
Query: 297 NQRAEGTFAG 326
QR GTF G
Sbjct: 179 EQRENGTFPG 188
>At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putative
similar to subunit 6b of cytochrome c oxidase
[Arabidopsis thaliana] gi|6518353|dbj|BAA87883
Length = 164
Score = 96.7 bits (230), Expect = 6e-21
Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Frame = +3
Query: 87 MPEMIKSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHR------CQKVRGEKYEPCYYFK 248
+ +K +LKTAP D RFP NQTRHC+ Y++FHR C +GE C F
Sbjct: 77 LARFLKPRIELKTAPADFRFPTTNQTRHCFTRYIEFHRYSCVIECTTAKGEDANECERFA 136
Query: 249 RVYRSLCPNEWVDKWDNQRAEGTFAG 326
+ YR+LCP EWVDKW+ QR GTF G
Sbjct: 137 KYYRALCPGEWVDKWNEQRETGTFPG 162
>At1g32710.1 68414.m04034 cytochrome c oxidase subunit VIb family
contains similarity to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353; contains Pfam
profile PF02297: Cytochrome oxidase c subunit VIb
Length = 134
Score = 52.4 bits (120), Expect = 1e-07
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +3
Query: 126 APFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDK 290
A + RFP N+TRHC+ ++ +H+C + G C + RS+CP E V K
Sbjct: 59 AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSK 113
>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
factor (HB-14) identical to homeodomain transcription
factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
thaliana];
Length = 852
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 157 IRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTS 291
+ + T T V W + K + ISR C+G++A G S
Sbjct: 183 LSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVS 227
>At5g54010.1 68418.m06718 glycosyltransferase family protein
contains Pfam profile: PF00201 UDP-glucoronosyl and
UDP-glucosyl transferase
Length = 453
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 187 WTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAP 309
W +AR++ K+ N TIS C +S S S P
Sbjct: 118 WIPEIAREYGVKSVNFITISAACVAISFVPGRSQDDLGSTP 158
>At4g08500.1 68417.m01401 mitogen-activated protein kinase kinase,
putative similar to mitogen-activated protein kinase
MEKK1 GP|1255448 [Arabidopsis thaliana]
Length = 608
Score = 29.1 bits (62), Expect = 1.4
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 160 RRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSA-PMSGSTSG-TTSAPKAPSPVGF 333
RRG +T + R+ AA+N N+ S C+ SA +S STS T + + P P F
Sbjct: 14 RRGGDKNITPVRRLERRDAARNINYDAAS--CSSSSAEDLSVSTSSLMTRSLEFPEPTSF 71
Query: 334 R 336
R
Sbjct: 72 R 72
>At4g00585.1 68417.m00082 expressed protein
Length = 88
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 327 YRRRCLRRAGCPTCRPTHWGRET 259
+R + G P CRP HW R T
Sbjct: 15 FRAKVWSMTGGPNCRPKHWRRNT 37
>At2g19010.1 68415.m02219 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL1 GI:15054382 from
[Arabidopsis thaliana]; contains Pfam profile PF00657:
GDSL-like Lipase/Acylhydrolase
Length = 344
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3
Query: 393 SFDLIKTNRNKLKHWERLGSKSYRRRCLRRAGC-PTCRPTHWGRETCTLS*NSSMVRIFR 217
++ LI R+ LK+ RLG++ L + GC P +H + C+ N + V+IF
Sbjct: 181 AYSLIIIYRSHLKNLHRLGARKVAVFGLSQIGCTPKIMKSHSDGKICSREVNEA-VKIFN 239
Query: 216 REL 208
+ L
Sbjct: 240 KNL 242
>At1g30490.1 68414.m03727 homeobox-leucine zipper transcription
factor (HB-9) identical to HD-Zip protein GB:CAA71854
GI:2145358 from [Arabidopsis thaliana]
Length = 841
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 163 RGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTS 291
+ T T V W + K + +SR C+G++A G S
Sbjct: 181 KATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGIAARACGLVS 223
>At1g01240.3 68414.m00041 expressed protein
Length = 331
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 109 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVAR-KF-AAKNTNHATISRECTGLSAPMSG 282
PP K H S H S + TA K W V + +F + + N +T S+ + +S+P S
Sbjct: 147 PPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPMSSPRSD 206
Query: 283 STS 291
S
Sbjct: 207 DLS 209
>At1g01240.2 68414.m00040 expressed protein
Length = 331
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 109 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVAR-KF-AAKNTNHATISRECTGLSAPMSG 282
PP K H S H S + TA K W V + +F + + N +T S+ + +S+P S
Sbjct: 147 PPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPMSSPRSD 206
Query: 283 STS 291
S
Sbjct: 207 DLS 209
>At1g01240.1 68414.m00039 expressed protein
Length = 331
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 109 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVAR-KF-AAKNTNHATISRECTGLSAPMSG 282
PP K H S H S + TA K W V + +F + + N +T S+ + +S+P S
Sbjct: 147 PPPQKLHKSIHSSSGEKGFKTAVKSPWKQGVWKDRFERSLSYNGSTESKNTSPMSSPRSD 206
Query: 283 STS 291
S
Sbjct: 207 DLS 209
>At5g55600.1 68418.m06932 agenet domain-containing protein /
bromo-adjacent homology (BAH) domain-containing protein
contains Pfam profile PF01426: BAH domain and PF05641:
Agenet domain
Length = 663
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 30 WLPFSIEINPRNG*IIISNMPEMIKSPADLKTAPFD 137
W+P P I +SN P + +P D+KTA FD
Sbjct: 432 WVPAFKSAMPDKLGIRLSNRPTIRPAPRDVKTAYFD 467
>At5g44220.1 68418.m05410 F-box family protein similar to unknown
protein (pir||T06086)
Length = 295
Score = 27.5 bits (58), Expect = 4.2
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +3
Query: 78 ISNMPEMIKSPADLKTAPFDPRF--PNQNQTRHCYQSYVDFHRCQKVRGEKYEPC--YY 242
+++ E+I +P L P+ + P + TR + H C+ +R +K PC YY
Sbjct: 225 VTDAGELILAPISLPDPPYYVIYYDPQRQSTRKVVIRGITEHNCKLLRCKKRHPCILYY 283
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 166 GTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGT 297
GT KV W V + + ++R C GL A SGT
Sbjct: 464 GTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCLSGT 507
>At4g34390.1 68417.m04885 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 861
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 84 NMPEMIKSPADLKTAPFDPRFPNQNQTRH 170
++PE +KSPAD + +P P + + H
Sbjct: 134 DVPEEVKSPADFRLSPSSPLSASAREEDH 162
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +1
Query: 109 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGST 288
PP SK+ S + + G KV+W V + + ++R C GL A
Sbjct: 769 PPDSKKKGSKKKKV-EFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCL 827
Query: 289 SGT 297
SGT
Sbjct: 828 SGT 830
>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
kinase, putative
Length = 751
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 256 TGLSAPMSGSTSGTTSAPKAPSP 324
TG SAP+ GS TTS PSP
Sbjct: 609 TGGSAPIFGSKRSTTSLEFGPSP 631
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 135 DPRFPNQNQTRHCYQSYVDFHRCQKVRGEKY 227
DP FP N R+C++ H+C K E Y
Sbjct: 777 DPLFPTNNVGRNCFR----IHQCIKAFSEAY 803
>At3g17205.1 68416.m02196 HECT-domain-containing protein /
ubiquitin-transferase family protein weak similarity to
ubiquitin-protein ligase 2 [Arabidopsis thaliana]
GI:7108523; contains Pfam profile PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +3
Query: 240 YFKRVYRSLCPNEWVDKWDNQRAEGTFAGRI*ILNV 347
+F R ++ L P EW+D ++ + +G + L++
Sbjct: 723 HFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDI 758
>At1g71696.2 68414.m08283 carboxypeptidase D, putative similar to
carboxypeptidase D [Anas platyrhynchos]
gi|2789654|gb|AAB96915
Length = 491
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 156 NQTRHCYQSYVDFHRCQKVRGEKYE 230
N T +Q+Y D+HR V G+KYE
Sbjct: 366 NYTVKAHQTYADYHRL-LVPGQKYE 389
>At1g71696.1 68414.m08284 carboxypeptidase D, putative similar to
carboxypeptidase D [Anas platyrhynchos]
gi|2789654|gb|AAB96915
Length = 422
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 156 NQTRHCYQSYVDFHRCQKVRGEKYE 230
N T +Q+Y D+HR V G+KYE
Sbjct: 297 NYTVKAHQTYADYHRL-LVPGQKYE 320
>At4g32880.1 68417.m04679 homeobox-leucine zipper transcription
factor (HB-8) identical to HD-zip transcription factor
(athb-8) (GI:7270235) [Arabidopsis thaliana]
Length = 833
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 157 IRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSG 282
I + T T V W K + IS CTG++A G
Sbjct: 169 ISKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGIAARACG 210
>At3g58820.1 68416.m06556 F-box family protein contains F-box domain
Pfam:PF00646
Length = 413
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/44 (25%), Positives = 19/44 (43%)
Frame = -1
Query: 152 VREPWVERCCFEVGGRFDHLRHIAYYYLAVSWIYFNRKWQPHNR 21
+R P V +C ++ ++ L L + YF+ KW R
Sbjct: 368 LRFPEVSKCIMQMMEEYNKLSSCNVELLVTDYFYFSEKWTAKGR 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,593,136
Number of Sequences: 28952
Number of extensions: 197453
Number of successful extensions: 558
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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