Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10h06
(554 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_47685| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_33563| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17) 29 3.4
SB_28399| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_26334| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_8890| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_4852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16) 28 4.5
SB_24014| Best HMM Match : Metallophos (HMM E-Value=8.5) 28 4.5
SB_15312| Best HMM Match : EGF (HMM E-Value=7.1e-21) 28 5.9
SB_51327| Best HMM Match : DMA (HMM E-Value=0.00024) 27 7.8
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
TT+GSTC D CT++G +R LD
Sbjct: 39 TTLGSTCADSGITSSCTQLGQGERRSLD 66
>SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 311 SRVQTRPLYTSYFCTNLLGSAI*ASTTDGGARSPLRVPGSGCDP 180
+RV+ P++ +Y C N+ SAI + + AR+ VP G P
Sbjct: 541 ARVKEGPVFNAYACANMYQSAIFTAKVEIRARAITDVPKEGRFP 584
>SB_47685| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
T++GSTC D CT++G +R LD
Sbjct: 30 TSLGSTCADSGITSSCTQLGQGERRSLD 57
>SB_33563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 47
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
T++GSTC D CT++G +R LD
Sbjct: 8 TSLGSTCADSGITSSCTQLGQGERRSLD 35
>SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17)
Length = 380
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
T++GSTC D CT++G +R LD
Sbjct: 8 TSLGSTCADSGITSSCTQLGQGERRSLD 35
>SB_28399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 47
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
T++GSTC D CT++G +R LD
Sbjct: 8 TSLGSTCADSGITSSCTQLGQGERRSLD 35
>SB_26334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
T++GSTC D CT++G +R LD
Sbjct: 8 TSLGSTCADSGITSSCTQLGQGERRSLD 35
>SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
T++GSTC D CT++G +R LD
Sbjct: 153 TSLGSTCADSGITSSCTQLGQGERRSLD 180
>SB_8890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
T++GSTC D CT++G +R LD
Sbjct: 30 TSLGSTCADSGITSSCTQLGQGERRSLD 57
>SB_4852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 47
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 222 TTIGSTCLDCTTKQVCTKVGGIQRACLD 305
T++GSTC D CT++G +R LD
Sbjct: 8 TSLGSTCADSGITSSCTQLGQGERRSLD 35
>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
Length = 896
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -1
Query: 284 TSYFCTNLLGSAI*ASTTDGGARSPLRVPGSGCD-PWRYPRVDCAIVPA--SPT 132
TSY C + L S T L +P CD P RYP VD I+P SPT
Sbjct: 450 TSYPCVDALAIPQCDSPTRYPCLDALTIPQ--CDSPTRYPYVDALIIPQCDSPT 501
>SB_24014| Best HMM Match : Metallophos (HMM E-Value=8.5)
Length = 252
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 233 TDGGARSPLRVPGSGCDPW 177
T GGA+ P PG G PW
Sbjct: 32 TSGGAKDPSGAPGDGFHPW 50
>SB_15312| Best HMM Match : EGF (HMM E-Value=7.1e-21)
Length = 77
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 213 APCTTIGSTCLDCTTKQVCTKVGGIQRACLDPTLPYCNLGEC 338
+PC G+TC+D K CT GG + + C C
Sbjct: 8 SPCQN-GATCVDGINKYTCTCAGGYTGTHCETDINECASSPC 48
>SB_51327| Best HMM Match : DMA (HMM E-Value=0.00024)
Length = 236
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 115 PPVVPAVGEAGTMAQSTLGYLHGSHPLPGTRSGLLAPPSVV 237
PPV+P+ GE GTM + L+ + + G L+ PP ++
Sbjct: 102 PPVIPSSGEPGTM-NPLIPPLYKMNYMNGQYRFLMPPPGMM 141
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,941,477
Number of Sequences: 59808
Number of extensions: 336819
Number of successful extensions: 1093
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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