Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10h04
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    26   4.9  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   8.6  

>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 350 QILIKTNSINLFSIRPQTISNNKSLTVNKEY 258
           +IL K +S +  S  P  ISN     +NKEY
Sbjct: 195 EILPKASSDSAGSFEPPVISNISKELINKEY 225


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/58 (18%), Positives = 27/58 (46%)
 Frame = +3

Query: 135 ESKEGVQNPIIFLKLCINNTLINNKSITHTTTYLRHTFK*FILFVYRQTFVIAYSLWS 308
           E+   + + +  LK+     ++N  ++     Y   +FK +   V   ++ +A+ LW+
Sbjct: 497 ETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGVALFSYPVAFELWN 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,711
Number of Sequences: 5004
Number of extensions: 39187
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)