Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g17
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415...    33   0.14 
07_01_0126 - 947072-948687,949454-949627,950117-951572                 30   0.76 
04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539...    27   5.3  

>02_02_0444 +
           10340927-10341063,10341157-10341241,10341480-10341537,
           10343738-10345885,10345943-10346388
          Length = 957

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 170 MFKGLIIFGAGVYTGVYVAQNYQIEKVE 253
           +FKG   F  G+  GVYVAQNY +  ++
Sbjct: 3   LFKGSFTFMVGMGCGVYVAQNYNVPNIK 30


>07_01_0126 - 947072-948687,949454-949627,950117-951572
          Length = 1081

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 443 HSLNCIYYTIIVKLIINMYKQLITILFHNSCSHFPNFNLFFHLVLQKVLISRKL 282
           HSL      ++  + + +    + ++F NSC H        HL+L K L  R++
Sbjct: 696 HSLQEQLQQVVGSIEVTLEDMSVFVMFLNSCPHLCRQPYSMHLLLDKCLFGRQM 749


>04_04_1608 -
           34753321-34753332,34753434-34753628,34753868-34753972,
           34754176-34754219,34754645-34754700,34755986-34756146
          Length = 190

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 170 MFKGLIIFGAGVYTGVYVAQNYQIEKVEDPKALFEKAQAFVKS 298
           +F  L+     + T V++  N++ +  +DP   FE+ + F++S
Sbjct: 64  VFMCLLTCSGAITTDVFLNSNWEEDFPDDPSGKFEEFKDFIRS 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,062,657
Number of Sequences: 37544
Number of extensions: 113782
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)