Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g17
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.2  
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.2  
SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)              27   9.6  

>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 452 FFFHSLNCIYYTIIVKLIINMYKQLITILFHNSCSHF 342
           FFF  +NC    ++  L I  Y++ + I+  N  + F
Sbjct: 303 FFFSHVNCCLNPLVYLLFIENYRRGVKIILRNLMARF 339


>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1125

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 452  FFFHSLNCIYYTIIVKLIINMYKQLITILFHNSCSHF 342
            FFF  +NC    ++  L I  Y++ + I+  N  + F
Sbjct: 1046 FFFSHVNCCLNPLVYLLFIENYRRGVKIILRNLMARF 1082


>SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)
          Length = 369

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 452 FFFHSLNCIYYTIIVKLIIN-MYKQLITILFHNSCSHFPNFN 330
           FFF  L+  Y    + LI   +Y   I +LF N+C H+ + N
Sbjct: 124 FFFICLSGYYSDCTIPLIEGAVYMVHIAVLFPNACRHWRDDN 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,091,221
Number of Sequences: 59808
Number of extensions: 151683
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)