Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g17
         (453 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC006417-1|AAH06417.2|  580|Homo sapiens XRN2 protein protein.         29   9.8  
AY382900-1|AAR24369.1|  907|Homo sapiens 5'-3' exoribonuclease 2...    29   9.8  
AL158013-2|CAH71495.1|  950|Homo sapiens 5'-3' exoribonuclease 2...    29   9.8  
AL117332-2|CAI19756.1|  950|Homo sapiens 5'-3' exoribonuclease 2...    29   9.8  
AK000084-1|BAA90934.1|  560|Homo sapiens protein ( Homo sapiens ...    29   9.8  
AF152169-1|AAQ13577.1|  950|Homo sapiens DHP protein protein.          29   9.8  

>BC006417-1|AAH06417.2|  580|Homo sapiens XRN2 protein protein.
          Length = 580

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 129 KIYWDRHELLPMLIYCKCLPMLFEIMSNLFFNINYNVP 16
           K   D   +LP  I C  +PML ++  N   +IN+  P
Sbjct: 351 KFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDP 388


>AY382900-1|AAR24369.1|  907|Homo sapiens 5'-3' exoribonuclease 2
           isoform 3 protein.
          Length = 907

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 129 KIYWDRHELLPMLIYCKCLPMLFEIMSNLFFNINYNVP 16
           K   D   +LP  I C  +PML ++  N   +IN+  P
Sbjct: 678 KFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDP 715


>AL158013-2|CAH71495.1|  950|Homo sapiens 5'-3' exoribonuclease 2
           protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 129 KIYWDRHELLPMLIYCKCLPMLFEIMSNLFFNINYNVP 16
           K   D   +LP  I C  +PML ++  N   +IN+  P
Sbjct: 721 KFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDP 758


>AL117332-2|CAI19756.1|  950|Homo sapiens 5'-3' exoribonuclease 2
           protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 129 KIYWDRHELLPMLIYCKCLPMLFEIMSNLFFNINYNVP 16
           K   D   +LP  I C  +PML ++  N   +IN+  P
Sbjct: 721 KFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDP 758


>AK000084-1|BAA90934.1|  560|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20077 fis, clone COL02904. ).
          Length = 560

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 129 KIYWDRHELLPMLIYCKCLPMLFEIMSNLFFNINYNVP 16
           K   D   +LP  I C  +PML ++  N   +IN+  P
Sbjct: 331 KFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDP 368


>AF152169-1|AAQ13577.1|  950|Homo sapiens DHP protein protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 129 KIYWDRHELLPMLIYCKCLPMLFEIMSNLFFNINYNVP 16
           K   D   +LP  I C  +PML ++  N   +IN+  P
Sbjct: 721 KFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDP 758


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,151,034
Number of Sequences: 237096
Number of extensions: 703711
Number of successful extensions: 1084
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)