Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g17
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-10|AAY55842.1|   50|Caenorhabditis elegans Hypothetical...    38   0.003
Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical pr...    31   0.30 
Z81030-4|CAB02708.1|   89|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z49886-2|CAA90051.1|  268|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z81065-1|CAB02968.1|  399|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     27   8.4  

>AF067211-10|AAY55842.1|   50|Caenorhabditis elegans Hypothetical
           protein B0205.12 protein.
          Length = 50

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 170 MFKGLIIFGAGVYTGVYVAQNYQIEKVEDPKALFEKAQAFVK 295
           +F  L+  G G Y G Y AQNY+++K+     + +  + ++K
Sbjct: 3   LFSHLLTMGLGAYAGAYFAQNYELQKLPSASEMMKNVEDYLK 44


>Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical
           protein T06D8.2 protein.
          Length = 708

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 449 FFHSLNCIYYTIIVKLIINMYKQLITILFHNSCSHFPNFNL 327
           +F S++C+   ++ + +  +YK ++ +  H   S  PN NL
Sbjct: 502 YFESISCLLAHLLKEPLFTVYKDVLLLWHHFCTSRLPNMNL 542


>Z81030-4|CAB02708.1|   89|Caenorhabditis elegans Hypothetical
           protein C01G10.6 protein.
          Length = 89

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 450 FFSQFELYLLYYYCKTNNKYVQT 382
           F +Q + Y LYYY  TNN   QT
Sbjct: 13  FIAQAQAYYLYYYYPTNNNGYQT 35


>Z49886-2|CAA90051.1|  268|Caenorhabditis elegans Hypothetical
           protein C06A1.2 protein.
          Length = 268

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 182 IL*TFCCLDFKY*FTRQEKSIGIDTNYSLCSYIASVYLCYLK 57
           +L  FCC+D      +    +G+D    L   I  ++ C LK
Sbjct: 11  VLVIFCCIDIPSFLLQHASFLGLDVTVRLLPKIMIIFTCTLK 52


>Z81065-1|CAB02968.1|  399|Caenorhabditis elegans Hypothetical
           protein F16C3.1 protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 116 IDTNYSLCSYIASVYLCYLK**AIYFLT*IIMSLHKTY 3
           I TN+ L    +++YLC L   + +FL  +I+S   TY
Sbjct: 45  IRTNFWLRRLTSNIYLCTLSVSSCFFLLTVIISWADTY 82


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 386 KQLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 279
           +++I  LFH   +H  N  + +H V  K +++ K+V
Sbjct: 744 QEVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 778


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 386 KQLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 279
           +++I  LFH   +H  N  + +H V  K +++ K+V
Sbjct: 744 QEVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 778


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 386 KQLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 279
           +++I  LFH   +H  N  + +H V  K +++ K+V
Sbjct: 697 QEVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 731


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,869,413
Number of Sequences: 27780
Number of extensions: 126503
Number of successful extensions: 341
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)