Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10g16
(504 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 2.1
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 2.1
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 26 2.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.7
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 4.9
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 25 4.9
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 6.5
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 8.5
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 8.5
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 8.5
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 8.5
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 4 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 135
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 102 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 242
HKG + +E+++ Y+ VTRK I + P + + SQ I+ PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.2 bits (55), Expect = 2.8
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -3
Query: 412 HRKFGYYTLIICIRSVYGVHSLFIGVRRDLSLGFE*NPGLLYVAIAQAVLPLYKNKNKTC 233
+ + G Y I I VYG+H L+ G L F G+ +VA Q L ++
Sbjct: 57 YSRHGLYKAIKHIYHVYGLHGLYQGHTATLYRVFP-YAGIKFVAYEQVRRVLIRDPEHET 115
Query: 232 NGRR 221
+ RR
Sbjct: 116 HARR 119
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 279 MATYSNPGFYSNPNDKSRLTPINSEWTP 362
+++YS+P P+ S +P +SE+TP
Sbjct: 103 VSSYSDPATSQLPSSTSFFSPTSSEYTP 130
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 13 KEKNKFLNGIENFDPTKLKHTETCEKN 93
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 1 IEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 99
I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 165 IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +3
Query: 261 GNTAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 362
GNT + + NP F PN R+ W P
Sbjct: 90 GNTLYTYYGFDNPIFLCGPNGAPRMCGTCKCWLP 123
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 8.5
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +3
Query: 3 RSGEGKEQIPERHRELRSH*AE----AHGNVREEPAPHKG 110
R G +IP+RHR+ R + G RE+P H G
Sbjct: 6 RLSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYG 45
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +3
Query: 9 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 110
GE P +H EL H H E+ HKG
Sbjct: 334 GEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.6 bits (51), Expect = 8.5
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +2
Query: 224 SSITSFIFVF--VQWQHCLGNGDVQQPRILFKS*RQVAPYANKQRV 355
S+I SF V W + D++QPR+ Y N QR+
Sbjct: 1163 SAIVSFFKALCEVSWDEITSSSDLEQPRLYSLQKLVEISYYNMQRI 1208
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 288 TSPLPRQCCHCTKTKIKLVMDDANRSDLH 202
TSPLP+ C K + L + +RS +H
Sbjct: 48 TSPLPQISCLLRKDDVPLANKELSRSLIH 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,034
Number of Sequences: 5004
Number of extensions: 38105
Number of successful extensions: 92
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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