Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g16
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)                    43   2e-04
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                      29   2.9  

>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
          Length = 750

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +1

Query: 31  LNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 132
           ++ + +FD +KLKH E  EKNPLPTKD I  E +
Sbjct: 680 VSAVASFDASKLKHVEVQEKNPLPTKDDITTEST 713



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +1

Query: 40  IENFDPTKLKHTETCEKNPLPTKDVIEQEK 129
           +++F+ +KL+H ET EKN LPTKD I  EK
Sbjct: 454 VKSFEKSKLQHVETKEKNTLPTKDTIADEK 483



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 16/29 (55%), Positives = 24/29 (82%)
 Frame = +1

Query: 40  IENFDPTKLKHTETCEKNPLPTKDVIEQE 126
           +++FD +KLKH ET EKNPLP+  V+++E
Sbjct: 643 VKSFDHSKLKHVETVEKNPLPSAAVLKEE 671



 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +1

Query: 40  IENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 135
           ++ FD +KLKH +T EKNPLP    I QEK++
Sbjct: 719 VKTFDHSKLKHVQTEEKNPLPDAKTIAQEKAS 750



 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +1

Query: 7   AEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 126
           A++++    +G+E F   KLKH ET EKNPLP    I  E
Sbjct: 480 ADEKRTAPFSGVEVFQKNKLKHVETLEKNPLPDAQNIRAE 519



 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +1

Query: 40  IENFDPTKLKHTETCEKNPLPTKDVIEQE 126
           +  FD +KLKH ET EK  +PTKDVIE E
Sbjct: 531 VAKFDTSKLKHVETKEKVVMPTKDVIEAE 559



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 40  IENFDPTKLKHTETCEKNPLPTKDVIEQE 126
           +++FD +KLKH  T EKNPLPT   + +E
Sbjct: 567 VKSFDHSKLKHVVTQEKNPLPTPQTLHEE 595



 Score = 35.1 bits (77), Expect = 0.033
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 40  IENFDPTKLKHTETCEKNPLPTKDVIEQE 126
           +  FD   LKH +T EKN LP+ + I+QE
Sbjct: 414 VAKFDAANLKHVQTKEKNTLPSDETIKQE 442



 Score = 32.7 bits (71), Expect = 0.18
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 40  IENFDPTKLKHTETCEKNPLPTKDVIEQE 126
           + +FD TKLKH  T EK+ +P+++ I++E
Sbjct: 607 VASFDHTKLKHVTTQEKSIMPSQEDIKEE 635


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 199 LM*VRSICVVHYKFYFCFCTMATLPG 276
           L+ V  IC VH  FY+C C  +++ G
Sbjct: 55  LVAVLRICSVHLDFYYCTCVWSSMAG 80


>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 156 VTRKCISLVSPYFNIDVSQIDL 221
           +  KC  L+SPY ++D+   DL
Sbjct: 13  IAAKCTQLISPYLDLDIKYFDL 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,271,209
Number of Sequences: 59808
Number of extensions: 278370
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)