Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g16
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    37   0.010
AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical...    30   0.83 
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    27   5.8  
U58758-15|AAB93424.1|  259|Caenorhabditis elegans Nanos related ...    27   7.7  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = +1

Query: 1   IEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEK 129
           +  EK+  + ++ IE+FD TKL  T   EK  LP+ D I+QEK
Sbjct: 41  VAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEK 83



 Score = 36.7 bits (81), Expect = 0.010
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 1   IEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 132
           I+ EK+  +  + I NF    LK TET EKN LP+   + +EK+
Sbjct: 79  IKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 30.7 bits (66), Expect = 0.63
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 61  KLKHTETCEKNPLPTKDVIEQEK 129
           +LK  ET EKN LPTK+ + +EK
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEK 45


>AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical
           protein T12B5.3 protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 230 ITSFIFVFVQWQHCLGNGDVQQPRILFKS*RQVAPYANKQRVDAINRSNTDN 385
           ITSFI  F++ + C+   ++   R+LF     + P+ N + ++ I  S TDN
Sbjct: 131 ITSFIN-FLKAKDCIHVKEIHFNRLLFDDILSILPFFNAKVLENIKLSETDN 181


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 9   GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 146
           G+ + Q P+  +  RS   +  G++   P P      A EI L+HY
Sbjct: 320 GQNQPQQPQYQQHPRSQSVDPSGDMNGGPRPIHQNFSASEIELHHY 365


>U58758-15|AAB93424.1|  259|Caenorhabditis elegans Nanos related
           protein 2 protein.
          Length = 259

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 246 LFLYNGNTAWAMATYSNPGF-YSNPNDKSRLTPINSEWTP*T 368
           L LY     +  AT  +P F  S+P+D S     +SEW+P T
Sbjct: 21  LSLYYLEDVFLSATTPSPTFDLSDPSDPSLSDSFDSEWSPMT 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,708,573
Number of Sequences: 27780
Number of extensions: 213393
Number of successful extensions: 506
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)