Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10g14
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 50 2e-07
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 27 3.0
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.9
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 3.9
SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo... 26 5.2
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 5.2
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 25 9.0
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 9.0
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 9.0
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 25 9.0
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Frame = +3
Query: 381 LRKSVMRKTVDYNAAIIKALECRVWQRDWRDRHALQPDAMYTPDLLPPPSYPDNPINAVT 560
++K + R+TVDY + + K + R + + H +P+ +L PP Y N +++
Sbjct: 10 IQKPMTRRTVDYGSGLSKYIVNRHLRSNRYHIHVPRPNPNQIINLYPPYEYKYNNTSSLC 69
Query: 561 TRFVKTATNKMRCPIFAVAWTPE 629
T+++ T+ NK R I V WTP+
Sbjct: 70 TKYIHTSANKARHVINVVRWTPD 92
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 375 KRLRKSVMRKTVDYNAAIIKALECRV---WQRDWRDRHALQPDAMY-TPDLLPPPSYPDN 542
++LRKS+M+K+ D ++ + RV + R +L+ + + T D P +PDN
Sbjct: 123 RKLRKSLMKKSEDDEEQGVRGRKIRVMLPYLHSLRSPTSLKNFSRFDTHDSTNNPYFPDN 182
Query: 543 P 545
P
Sbjct: 183 P 183
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 202 PKSMFYYLDTLS*FIYYNIVDCFFTAAQ 119
P+S+FY+ +L FI + D F+ +AQ
Sbjct: 123 PESIFYHFVSLQSFIRKYLTDVFYCSAQ 150
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 83 HNKILTIISKCVLCCCEETIDNVIVYKSR*GIQVIKHGFRTSSPE 217
H+ +L I+ V C +D +++ G V++ G RT PE
Sbjct: 415 HSHVLPIL---VACQTNHAVDQILIRLLHQGASVMRLGSRTKDPE 456
>SPBC4B4.06 |vps25||ESCRT II complex subunit
Vps25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +1
Query: 217 TWVCPRRAWV*WVHPWARHRGGTTFAITLDL 309
TW + AW W+ W R T+ I +L
Sbjct: 21 TWHSQKAAWQMWILLWCRENRQTSITINPEL 51
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 279 RNNIRHNFRPFNYQMRFPPQGPLNMTQ 359
++NIR++ P Q P Q P+N TQ
Sbjct: 197 KDNIRNSATPSTSQADIPTQYPINSTQ 223
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 528 SYPDNPINAVTTRFVKTATNKMRCPIF 608
SYPD + + F + N +CP+F
Sbjct: 343 SYPDTHRHRLGANFEQIPVNSPKCPVF 369
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.0 bits (52), Expect = 9.0
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = +3
Query: 399 RKTVDYNAAIIKALECRVWQRDWR 470
+KTVDY ++++ + W +W+
Sbjct: 172 QKTVDYRLSLLRWIHLSSWPSNWK 195
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 453 WQRDWRDRHALQPDAMYTPDLLPPPSYPDN 542
W+ ++R R ++ + D LPPP P N
Sbjct: 206 WEGEFRARGFVEGELADPDDKLPPPGMPYN 235
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 251 GSTHGPATGAEQHS 292
G HGP GA+QHS
Sbjct: 173 GDHHGPTLGAKQHS 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,713
Number of Sequences: 5004
Number of extensions: 54423
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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