Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10g14
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 99 1e-21
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 35 0.046
11_03_0142 + 10675764-10675991,10676533-10676943 29 4.0
06_03_0619 + 22801576-22802016,22802111-22802596 29 4.0
05_01_0183 - 1289608-1289643,1289965-1290026,1290113-1290162,129... 29 4.0
09_04_0683 - 19431034-19431495,19431632-19431997,19432055-194323... 28 5.3
03_05_0837 + 28090924-28091880 28 5.3
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 28 5.3
04_03_0974 + 21367304-21369634 28 7.0
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 99 bits (238), Expect = 1e-21
Identities = 43/97 (44%), Positives = 61/97 (62%)
Frame = +3
Query: 336 QGPLNMTQDDFDGKRLRKSVMRKTVDYNAAIIKALECRVWQRDWRDRHALQPDAMYTPDL 515
Q P + D+F KR+RK V R+TVDY + +++ ++ R+WQRD RDR +QP D+
Sbjct: 69 QPPYDAYGDNFGAKRMRKPVQRRTVDYTSTVVRYVQARMWQRDARDRPTVQPTPAAVLDM 128
Query: 516 LPPPSYPDNPINAVTTRFVKTATNKMRCPIFAVAWTP 626
LP +YPDNP + +FV ++ NK RC I V WTP
Sbjct: 129 LPSVAYPDNPSTSFAAKFVHSSINKNRCSINRVLWTP 165
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 35.1 bits (77), Expect = 0.046
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 375 KRLRKSVMRKTVDYNAAIIKALECRVWQRDWRDRHALQPDAMYTPDLLPPPSYPDN-PIN 551
+RL K VD N ++ + VWQ ++RH P + +LPP ++ D+ I
Sbjct: 343 ERLYDLAESKRVDLNTSLKQNFRDWVWQSMLKERHDYVPPEDFITRVLPPEAFADSRDIP 402
Query: 552 AVTTRFVKTATNKMRCPI 605
F++ ++R P+
Sbjct: 403 EYEVAFIRVPLYELRDPV 420
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 250 WVHPWARHRGGTTFAITLDLSTTRCDFH 333
WV P H G T + L++ST FH
Sbjct: 92 WVRPMEEHGGSNTLDLELNISTIPSTFH 119
>06_03_0619 + 22801576-22802016,22802111-22802596
Length = 308
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -1
Query: 555 RHLLD----YQDMKEEVKGQGCT*RPVEAHVYRASLFAKRGILML 433
R LLD + DM V+ QG +E+HV AS F +RG + L
Sbjct: 222 RSLLDLHQVFLDMAALVEAQGHQLNDIESHVAHASSFVRRGTVEL 266
>05_01_0183 -
1289608-1289643,1289965-1290026,1290113-1290162,
1290260-1290357,1290547-1290927,1291191-1291697,
1291922-1291996,1292095-1292286,1292599-1292658
Length = 486
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 77 YIHNKILTIISKCVLCCCEETIDNVIVYKSR*GIQVIKHGFRTSSPEHGYAPAGHG 244
+ HN ++ I V+ E +D I S Q + G + +HG+AP G G
Sbjct: 378 FFHNSLMLIF---VISKTGEALDEYIQSHSEVSHQEVLEGVSSILDDHGFAPTGKG 430
>09_04_0683 -
19431034-19431495,19431632-19431997,19432055-19432326,
19433621-19433686,19433924-19433978,19434509-19434577,
19435200-19435307,19435394-19435462,19435883-19436038,
19436089-19436229,19436514-19436568,19437103-19437233,
19437382-19437486
Length = 684
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 32 FNEVIVCNEICFLFVYIHNKILTIISKCVLCC-CEETIDNVIV 157
F+ + N C+ + ++ L+ +CVLC CEETID+++V
Sbjct: 529 FHNEVALNR-CWTADRLRSRGLSHPDRCVLCDQCEETIDHLLV 570
>03_05_0837 + 28090924-28091880
Length = 318
Score = 28.3 bits (60), Expect = 5.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 201 RNPCFITWIPYLDLYTITLSIVSSQQ 124
R+ C + W+PYL L+ + L + Q+
Sbjct: 266 RSRCVVIWVPYLGLFVLDLENMQMQR 291
>01_05_0195 -
19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 62 CFLFVYIHNKILTIISKCVLCC-CEETIDNVIV 157
C+ + ++ L+ +CVLC CEETID+++V
Sbjct: 731 CWTTYRLRSRGLSHPDRCVLCDQCEETIDHLLV 763
>04_03_0974 + 21367304-21369634
Length = 776
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +2
Query: 191 HGFRTSSPEHGYAPAGHGYDGSTHGPATG 277
HG TSS G A G Y G +G ATG
Sbjct: 215 HGSHTSSTAAGAAVPGASYFGYANGTATG 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,178,837
Number of Sequences: 37544
Number of extensions: 358098
Number of successful extensions: 1040
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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