Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g08
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||...    45   1e-05
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    26   4.6  

>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 118

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
 Frame = +2

Query: 233 LAGLSGAAAVILGAMGAHRTFPETEAKDDLKKIFETANRFHFLHTLALVTV---PLCRRP 403
           +A L+G  +V LGA G+H      +    L K + TA  +   H+LA + V   P+  + 
Sbjct: 6   VAALTGLLSVGLGAYGSHGLQKRVQ-DPHLLKSWSTACTYLMFHSLATMAVSLHPVYGKS 64

Query: 404 YIAGAFFIAGMGMFCGTCY-YHAFTGDRKLRQV----TPLGGTCLILGWIAMV 547
              G   I G  +F GT Y          LR++    TP+GG  ++ GW  M+
Sbjct: 65  RWTGPLLITGSCLFSGTIYGLCLLPKGHSLRRILGPLTPIGGLVMLTGWATML 117


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 244 KWCCCCNPWCYGS 282
           ++C CCNPW  G+
Sbjct: 24  QFCLCCNPWYAGA 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,868
Number of Sequences: 5004
Number of extensions: 48493
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)