Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g08
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.30 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 13/52 (25%), Positives = 21/52 (40%)
 Frame = +2

Query: 146 SSSVDKPPTTIMIRAPLWQLAQEAGPFVRLAGLSGAAAVILGAMGAHRTFPE 301
           S S+ +PP        +W+  +    F+R   LSG+   +       R F E
Sbjct: 308 SKSITEPPKNCADSGSIWETGKNLFEFIRKQVLSGSTGKVAFDDNGDRIFAE 359


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 75  DKFIH*SLSS*KIMCIIYAIVYQGI 1
           D  I+ SLSS  I CII   +Y  I
Sbjct: 342 DFIIYSSLSSFYIPCIIMVFLYYNI 366


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 281 AHRTFPETEAKDDLKKIFETANRFH 355
           A  TFP   +K   + +  T +RFH
Sbjct: 190 AMETFPSVYSKTRRRALEHTLDRFH 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,354
Number of Sequences: 438
Number of extensions: 3428
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)