Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g07
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    29   0.62 
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    27   2.5  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   3.3  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    27   3.3  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   4.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.8  

>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 370 QCFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVH 477
           Q  RDF+   +  HG + +HF +   +YI  ++ VH
Sbjct: 71  QFLRDFISLLRTAHGEKKIHFNQFYQEYIRDKNHVH 106


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 538 IEEFDFAIMERLCIARESENREEIITVL--KLFXV 636
           IEE D+A+ E+  + + SENR+E   +L  KL+ +
Sbjct: 688 IEERDYALAEKADLLKLSENRKEQCKILTQKLYTI 722


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 373 CFRDFMEEAKMRHGLRTLHFWERVDKYISSQD 468
           CF +FME    ++  R LHFW  V+    SQD
Sbjct: 403 CFLEFMER---KNRSRYLHFWLVVEGLKESQD 431


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -1

Query: 653 KAFAASTLNSFSTVIISSLFSDSRAIHSLSMMAKSNSSIFFATSIKLSTRLRHPECDA 480
           K+   S L     V   ++FS S  I  L  +   +S++FFA S   ST+  + E DA
Sbjct: 193 KSLERSNLKRLHIVGRRNIFSVSFTIKELRELFALSSAVFFAPSFNYSTKWMN-ETDA 249


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 60  LTLDFSNQNHYGVY*VQFLS*VKEEIDVNEGNYLSITFT 176
           + LDFS  NH     VQ L   ++E+++  G+ +   FT
Sbjct: 673 IILDFSAVNHIDTTGVQALVDTRKELEIYAGDEVEFHFT 711


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -2

Query: 559 WQSRIPQFFSLHRLNYPHV*DIPSVTHCALYLEKRYICRHA 437
           W+  +PQ  +LHRL Y  + D+    +  L+ +  +    A
Sbjct: 247 WKLNLPQMANLHRLGYQLLSDLRDDNYFYLFNDNSFFTAKA 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,408
Number of Sequences: 5004
Number of extensions: 49865
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)