Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10g07
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97008-10|AAB52315.2| 494|Caenorhabditis elegans Cytochrome p45... 29 2.3
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 29 4.1
Z34799-4|CAD44130.2| 691|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z71186-4|CAA94916.1| 867|Caenorhabditis elegans Hypothetical pr... 28 5.4
U52517-1|AAA97927.1| 846|Caenorhabditis elegans hum-3 protein. 28 5.4
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 28 5.4
Z73422-7|CAA97769.2| 603|Caenorhabditis elegans Hypothetical pr... 27 9.4
U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti... 27 9.4
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 27 9.4
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti... 27 9.4
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform... 27 9.4
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform... 27 9.4
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein. 27 9.4
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo... 27 9.4
>U97008-10|AAB52315.2| 494|Caenorhabditis elegans Cytochrome p450
family protein 35A2 protein.
Length = 494
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +1
Query: 430 FWERVDKYISSQDTVHSASHSGCLKRVDSLIDVAKKIEE---FDFAIMERLCIARESENR 600
F R DK S+Q+T + + + +KRV+S+ I+E D+ L I +E E++
Sbjct: 229 FKHRYDKIWSAQETAKNFAAAEAIKRVESIKSGKYVIDENNLQDYTDAFLLKIQKEGESK 288
Query: 601 EEIITVLKLFXVE 639
+ I LK ++
Sbjct: 289 DFNIETLKTMIID 301
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 28.7 bits (61), Expect = 4.1
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = -1
Query: 644 AASTLNSFSTVIISSLFSDSRA--IHSLSMMAKSNSSIFFATSIKLSTRLRHPECDALCT 471
++ST +S ST ++SS S + + S S S ++ F TS +T ++ C A C+
Sbjct: 108 SSSTSSSDSTSVVSSTSSSTTTTCVDSFSTCT-SWAANGFCTSSFYTTAIKTQYCAATCS 166
Query: 470 VS*EEIYLSTRSQKCKVLSPCLILASSIKS 381
+ S+ S S C ASS S
Sbjct: 167 LCSSSSDSSSSSSTASTSSSCTDSASSCSS 196
>Z34799-4|CAD44130.2| 691|Caenorhabditis elegans Hypothetical
protein F34D10.7 protein.
Length = 691
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 430 FWERVDKYISSQDTVHSASHSGCLKRVDSLID 525
F + +Y++ D +H A G ++RV SLID
Sbjct: 60 FLSGLTQYLTKIDAIHKAVEEGDVRRVKSLID 91
>Z71186-4|CAA94916.1| 867|Caenorhabditis elegans Hypothetical
protein F23D12.5 protein.
Length = 867
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 517 LIDVAKKIEEFDFAIMERLCIARESENREEIITV 618
L +AK EFDFAI E + I R ++N + II V
Sbjct: 776 LKSLAKSQFEFDFAIQENMLI-RSAKNEKSIIPV 808
>U52517-1|AAA97927.1| 846|Caenorhabditis elegans hum-3 protein.
Length = 846
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 487 HSGCLKRVDSLI-DVAKKIEEFDFAIMERLCIARESENREE 606
+ C+KRVDS+I D+ ++E + A +ER E + R E
Sbjct: 702 YEDCVKRVDSIIADLKLQLENDELAEVERARKEAEDKERRE 742
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 487 HSGCLKRVDSLI-DVAKKIEEFDFAIMERLCIARESENREE 606
+ C+KRVDS+I D+ ++E + A +ER E + R E
Sbjct: 905 YEDCVKRVDSIIADLKLQLENDELAEVERARKEAEDKERRE 945
>Z73422-7|CAA97769.2| 603|Caenorhabditis elegans Hypothetical
protein B0564.7 protein.
Length = 603
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 680 LLKALYSRFKAFAASTLNSFSTVIIS-SLFSDSRAIHSLSMMAKSNSSIFFATSIKLSTR 504
L KAL AST N++ ++ S + F + A+H+ S++ KS +++++ R
Sbjct: 361 LAKALKPFLVKEKASTPNNWLNIVFSLAYFQELEAVHADSVLNKSFVDQIMNSTMEIHDR 420
Query: 503 LR 498
LR
Sbjct: 421 LR 422
>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform d protein.
Length = 1058
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = +1
Query: 364 GRQCFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSGCLKRVDSLIDVAKKIE 543
GR+C E H +L FW+ +++ + S+SH L+ +++ V+ ++
Sbjct: 386 GRECATGHQELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVK 445
Query: 544 EFDFAIMER 570
+ + R
Sbjct: 446 YIELCLESR 454
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = +1
Query: 364 GRQCFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSGCLKRVDSLIDVAKKIE 543
GR+C E H +L FW+ +++ + S+SH L+ +++ V+ ++
Sbjct: 386 GRECATGHQELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVK 445
Query: 544 EFDFAIMER 570
+ + R
Sbjct: 446 YIELCLESR 454
>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform a protein.
Length = 1124
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = +1
Query: 364 GRQCFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSGCLKRVDSLIDVAKKIE 543
GR+C E H +L FW+ +++ + S+SH L+ +++ V+ ++
Sbjct: 421 GRECATGHQELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVK 480
Query: 544 EFDFAIMER 570
+ + R
Sbjct: 481 YIELCLESR 489
>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
protein.
Length = 1133
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = +1
Query: 364 GRQCFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSGCLKRVDSLIDVAKKIE 543
GR+C E H +L FW+ +++ + S+SH L+ +++ V+ ++
Sbjct: 421 GRECATGHQELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVK 480
Query: 544 EFDFAIMER 570
+ + R
Sbjct: 481 YIELCLESR 489
>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
protein.
Length = 1128
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = +1
Query: 364 GRQCFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSGCLKRVDSLIDVAKKIE 543
GR+C E H +L FW+ +++ + S+SH L+ +++ V+ ++
Sbjct: 421 GRECATGHQELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVK 480
Query: 544 EFDFAIMER 570
+ + R
Sbjct: 481 YIELCLESR 489
>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
Length = 1058
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = +1
Query: 364 GRQCFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSGCLKRVDSLIDVAKKIE 543
GR+C E H +L FW+ +++ + S+SH L+ +++ V+ ++
Sbjct: 386 GRECATGHQELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVK 445
Query: 544 EFDFAIMER 570
+ + R
Sbjct: 446 YIELCLESR 454
>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
A protein.
Length = 1124
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/69 (20%), Positives = 31/69 (44%)
Frame = +1
Query: 364 GRQCFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSGCLKRVDSLIDVAKKIE 543
GR+C E H +L FW+ +++ + S+SH L+ +++ V+ ++
Sbjct: 421 GRECATGHQELVVTGHKDGSLKFWQETGEHLQILYKLKSSSHFERLEEMETSDKVSHAVK 480
Query: 544 EFDFAIMER 570
+ + R
Sbjct: 481 YIELCLESR 489
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,863
Number of Sequences: 27780
Number of extensions: 277600
Number of successful extensions: 674
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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