Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g07
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67580.2 68418.m08522 myb family transcription factor contain...    29   2.8  
At5g67580.1 68418.m08521 myb family transcription factor contain...    29   2.8  
At5g23010.1 68418.m02690 2-isopropylmalate synthase 3 (IMS3) ide...    29   2.8  
At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquiti...    29   3.8  
At3g22550.1 68416.m02849 senescence-associated protein-related s...    28   5.0  
At1g03300.1 68414.m00308 agenet domain-containing protein contai...    28   6.6  
At3g11680.1 68416.m01432 expressed protein contains Pfam profile...    27   8.7  

>At5g67580.2 68418.m08522 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 299

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 529 AKKIEEFDFAIMERLCIARESENREEIITVLKLFXVEAAKALK 657
           A+ + E +FAI E    A+E+E  E      ++F   A KALK
Sbjct: 249 ARAVAEAEFAITEAEQAAKEAERAEAEAEAAQIFAKAAMKALK 291


>At5g67580.1 68418.m08521 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 299

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 529 AKKIEEFDFAIMERLCIARESENREEIITVLKLFXVEAAKALK 657
           A+ + E +FAI E    A+E+E  E      ++F   A KALK
Sbjct: 249 ARAVAEAEFAITEAEQAAKEAERAEAEAEAAQIFAKAAMKALK 291


>At5g23010.1 68418.m02690 2-isopropylmalate synthase 3 (IMS3)
           identical to 2-isopropylmalate synthase (IMS3)
           [Arabidopsis thaliana] GI:15983745; identical to cDNA
           2-isopropylmalate synthase (IMS3)  GI:15983744
          Length = 506

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 181 RTFICFKKNN*YLRWTQSWTNEIMDTCFVACCCNCAKNYGFTKTDL 318
           R+ + F+ +   LR T S+ N  +   F++CC + +KN   + TDL
Sbjct: 22  RSVLPFQSSLHSLRLTHSYKNPAL---FISCCSSVSKNAATSSTDL 64


>At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquitin
           ligase SCF complex F-box subunit; identical to F-box
           containing protein ORE9 GI:15420162 from [Arabidopsis
           thaliana]
          Length = 693

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
 Frame = -1

Query: 644 AASTLNSFSTVI---ISSLFSDSRAIHSLSMMAKSNSSIFFATSIKLSTR 504
           A++TL+    VI   ISSL SDSRA +SLS+++    ++  +T   L+ R
Sbjct: 2   ASTTLSDLPDVILSTISSLVSDSRARNSLSLVSHKFLALERSTRSHLTIR 51


>At3g22550.1 68416.m02849 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana]
          Length = 267

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 262 FVACCCNCAKNYG 300
           F++CCCNC K+ G
Sbjct: 222 FLSCCCNCKKSLG 234


>At1g03300.1 68414.m00308 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 670

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 406 RHGLRTLHFWERVDKYISSQDT-VHSASHSGCLKRVDSLIDVAKKIEEFDFAIMERLCIA 582
           +HG        R+ K +  QD     A    CL++     ++ +K  E +FA  ER+ I 
Sbjct: 563 KHGFNVTDPLSRISKVLPLQDKRAKKAEERKCLEKKIECEEIERKRFEEEFADFERIIIE 622

Query: 583 RESE 594
           ++ +
Sbjct: 623 KKRQ 626


>At3g11680.1 68416.m01432 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 488

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 373 CFRDFMEEAKMRHGLRTLHFWERVDKYISSQDTVHSASHSGCLKRV 510
           C     E  +   GL   HF E +D  +S++   H   H GC+K V
Sbjct: 401 CVEKIYEAVEEFSGLA--HFKETLDSKLSAEIGQHQLLHRGCVKPV 444


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,149,507
Number of Sequences: 28952
Number of extensions: 247515
Number of successful extensions: 556
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)