Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10g06
(318 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29 pro... 89 3e-18
U49083-1|AAC50647.1| 159|Homo sapiens HIP protein. 89 3e-18
U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29 pro... 89 3e-18
BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29 p... 89 3e-18
BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29 p... 89 3e-18
BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29 p... 89 3e-18
BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29 p... 89 3e-18
BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29 p... 89 3e-18
AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA seq... 89 3e-18
AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein. 29 4.0
Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II pro... 28 6.9
X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II prot... 28 6.9
U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein. 28 6.9
BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for IM... 28 6.9
AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta p... 28 6.9
AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II be... 28 6.9
AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, b... 28 6.9
BC028614-1|AAH28614.1| 963|Homo sapiens Ras interacting protein... 27 9.1
BC021860-1|AAH21860.1| 317|Homo sapiens RASIP1 protein protein. 27 9.1
AY378097-1|AAR24580.1| 962|Homo sapiens Ras-interacting protein... 27 9.1
AK000408-1|BAA91145.1| 317|Homo sapiens protein ( Homo sapiens ... 27 9.1
>Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 53 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 223
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U49083-1|AAC50647.1| 159|Homo sapiens HIP protein.
Length = 159
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 53 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 223
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 53 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 223
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29
protein.
Length = 161
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 53 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 223
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 53 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 223
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 53 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 223
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 53 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 223
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 53 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 223
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA
sequence from clone RP11-632C17 on chromosome 6 Contains
the gene for a novel protein similar to ribosomal
protein L29 ).
Length = 172
Score = 89.0 bits (211), Expect = 3e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = +2
Query: 53 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 223
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 16 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 72
>AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein.
Length = 1721
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 41 KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTL 151
+L ++ + +H +R R G +PRK +H S+L
Sbjct: 715 ELARLQRKHDHERDESSRSPARRGPGRPRKRKHSSSL 751
>Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II protein.
Length = 1031
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 50 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 160
K + S+N ++N RK + KKP+KT + +D
Sbjct: 953 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 989
>X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II protein.
Length = 1621
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 50 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 160
K + S+N ++N RK + KKP+KT + +D
Sbjct: 1543 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1579
>U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein.
Length = 350
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 50 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 160
K + S+N ++N RK + KKP+KT + +D
Sbjct: 272 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 308
>BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for
IMAGE:4999541) protein.
Length = 485
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 50 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 160
K + S+N ++N RK + KKP+KT + +D
Sbjct: 407 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 443
>AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta
protein.
Length = 717
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 50 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 160
K + S+N ++N RK + KKP+KT + +D
Sbjct: 639 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 675
>AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II beta
protein.
Length = 1598
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 50 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 160
K + S+N ++N RK + KKP+KT + +D
Sbjct: 1520 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1556
>AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, beta
isozyme variant protein.
Length = 1009
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 50 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 160
K + S+N ++N RK + KKP+KT + +D
Sbjct: 931 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 967
>BC028614-1|AAH28614.1| 963|Homo sapiens Ras interacting protein 1
protein.
Length = 963
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 48 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 158
+ W S R A+L ++S Q PG PP AW
Sbjct: 849 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 885
>BC021860-1|AAH21860.1| 317|Homo sapiens RASIP1 protein protein.
Length = 317
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 48 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 158
+ W S R A+L ++S Q PG PP AW
Sbjct: 203 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 239
>AY378097-1|AAR24580.1| 962|Homo sapiens Ras-interacting protein
protein.
Length = 962
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 48 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 158
+ W S R A+L ++S Q PG PP AW
Sbjct: 848 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 884
>AK000408-1|BAA91145.1| 317|Homo sapiens protein ( Homo sapiens
cDNA FLJ20401 fis, clone KAT00901. ).
Length = 317
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 48 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 158
+ W S R A+L ++S Q PG PP AW
Sbjct: 203 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 239
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,778,477
Number of Sequences: 237096
Number of extensions: 899984
Number of successful extensions: 1922
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1922
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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