Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g05
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0287 - 27525722-27525812,27525927-27526057,27526945-275270...    29   1.8  
02_04_0391 + 22576839-22577387                                         27   4.1  
04_04_0845 - 28646547-28646637,28646724-28646854,28647832-286479...    27   5.5  
09_04_0684 - 19442335-19442990,19443774-19443839,19443935-194440...    26   9.5  
02_04_0318 - 21999640-21999705,21999706-21999768,21999822-219998...    26   9.5  

>02_05_0287 -
           27525722-27525812,27525927-27526057,27526945-27527022,
           27527080-27527186,27527302-27527380,27528001-27528096,
           27528192-27528443,27528691-27528840,27528953-27529277,
           27529373-27529584
          Length = 506

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 VGRMAMYTSFPVGLFFFFNQP-KYFEEWVTNTKRQIFPPEN 245
           VGR  + T+ P   ++ F Q  K FE W  +T  +IF  +N
Sbjct: 81  VGRPVVVTADPEMNYYVFQQEGKLFESWYPDTFTEIFGRDN 121


>02_04_0391 + 22576839-22577387
          Length = 182

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 177 FNQPKYFEEWVTNTKRQIFPPENQHDREAI 266
           FN+ K+ E   TN   Q+  P N+H+++ +
Sbjct: 47  FNKQKHVEIQPTNKLEQLIQPTNEHEQQQL 76


>04_04_0845 -
           28646547-28646637,28646724-28646854,28647832-28647938,
           28648043-28648121,28648578-28648667,28648814-28649065,
           28649367-28649519,28649631-28649955,28650069-28650283
          Length = 480

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 126 VGRMAMYTSFPVGLFFFFNQP-KYFEEWVTNTKRQIFPPEN 245
           VGR  + ++ P   ++ F Q  K FE W  +T  +IF  +N
Sbjct: 82  VGRPVVVSADPEMNYYVFQQEGKLFESWYPDTFTEIFGRDN 122


>09_04_0684 -
           19442335-19442990,19443774-19443839,19443935-19444032,
           19444787-19445157
          Length = 396

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 186 PKYFEEWVTNTKR-QIFPPENQHDREAIQKLIQDMRKKQMQSLESK 320
           PKY EEWV N  R       N   R   +    + R++ MQ+ +++
Sbjct: 192 PKYHEEWVRNNARANERSRRNDRPRNFDRSRNFERRRENMQNFQNR 237


>02_04_0318 -
           21999640-21999705,21999706-21999768,21999822-21999884,
           21999938-22000000,22001097-22001141,22001914-22002325,
           22003313-22003475,22004086-22004132,22004458-22004564,
           22004651-22004684,22004754-22004807,22005599-22005723
          Length = 413

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 344 YIIYKLGSLGFQTLHLFLP--HILY*FLN 264
           Y  Y L  L +QT+ LFLP  H  Y FLN
Sbjct: 339 YCYYFLNPLPYQTIRLFLPSWHCYY-FLN 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,798,651
Number of Sequences: 37544
Number of extensions: 193451
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)