Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10g04
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.)               54   1e-07
SB_54059| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_25948| Best HMM Match : Globin (HMM E-Value=1.5e-18)                38   0.010
SB_1785| Best HMM Match : DPPIV_N (HMM E-Value=0.00044)                33   0.16 
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   4.4  
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)                     28   5.9  
SB_43297| Best HMM Match : Astacin (HMM E-Value=3.5e-31)               28   5.9  
SB_27037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)               28   5.9  
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)             28   5.9  
SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)                28   7.7  

>SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 31/107 (28%), Positives = 50/107 (46%)
 Frame = +3

Query: 102 LTRREIHAVQKSWAPVNANSFATGSELLRRLFNTYPDTKEYFKMVRKLPEEEYSQNPQFK 281
           LT R+I  +Q SW  V       G +L  RLF   P  ++ F      P      +P  K
Sbjct: 168 LTERQIQLIQDSWTLVENQKQEAGIKLFTRLFKIAPYIRDLF------PFGYDPASPGLK 221

Query: 282 AHVINLMTSLNLAVNNLNQPEIVAAMMTKLGESHRRRQIKEKNFHEL 422
            H + +M ++ +AV  L+  E +A  + +LG+ H+R  +  + F  L
Sbjct: 222 THALGVMDTVEVAVRGLDDQESLALKLVELGQFHKRFGLTNQEFESL 268


>SB_54059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 29/148 (19%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
 Frame = +3

Query: 102 LTRREIHAVQKSWAPVNANSFATGSELLRRLFNTYPDTKEYFKMVRKLPEEEYSQNPQFK 281
           +T  + + ++++W  +  +    G  + +R  N +P  + YF   + +  +  + +    
Sbjct: 25  MTYEQKYLIRETWKFLEVSKKEIGVSVYKRFLNMHPGLQTYFSEFKHIKIDNINGS---H 81

Query: 282 AHVINLMTSLNLAVNNLNQPEIVAAMMTKLGESHRRRQIK--EKNFHELKEVIVKLFIDV 455
            H   L+ +++ AV  L   +  +A + +LG  H     +    +F++L+    K F+ V
Sbjct: 82  GHPRRLLMAIDNAVTALGDSDSFSAYLVELGRRHHGMNFRPGPTHFNDLR----KCFLSV 137

Query: 456 LRLDDATLSAWGKTVEFWYKHIFVTLNS 539
           +    AT S W   VE  +  +F ++ +
Sbjct: 138 IEEILATASLWDFQVEEAWNRLFDSITA 165


>SB_25948| Best HMM Match : Globin (HMM E-Value=1.5e-18)
          Length = 223

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
 Frame = +3

Query: 192 LFNTYPDTKEYFKMVRKLPE-EEYSQNPQFKAHVINLMTSLNLAVNNLNQPEIVAAMMTK 368
           LF+  P  +  F   R+    EE  ++   + H   +M  +  AVN+L     +   + +
Sbjct: 102 LFSENPTLQLMFPEFREYSTLEELKESRSLQGHTKRVMKVVENAVNSLEDGHALMEYLQE 161

Query: 369 LGESHRRRQIKE--KNFHELKEVIVKLFIDVLRLDDAT--LSAWGKTVEFWYKHIFVTLN 536
           LG  H+ RQIK    N  E+ + I + F + L +        +W   +++    I   L 
Sbjct: 162 LGRRHKTRQIKPTVSNLQEISQAINETFEENLGIKWTVEIAESWKLLLDYVMAMIIRGLR 221

Query: 537 SP 542
           SP
Sbjct: 222 SP 223


>SB_1785| Best HMM Match : DPPIV_N (HMM E-Value=0.00044)
          Length = 307

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 204 YPDTKEYFKMVRKL--PEEEYSQNPQFKAHVINLMTSLNLAVNNLNQPEIVAAMM 362
           Y   K+ +  V+KL  P+  Y+ NPQ KA ++NL    N+ +N ++ P  +  +M
Sbjct: 186 YGPNKDAYTEVKKLAYPKPGYN-NPQVKAMLVNLTALPNVTINEISPPSELETVM 239


>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 930

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -3

Query: 631 TSNSIHTNSTLFILNHYIISFVCICYLVSSGLFNVTNICLYQNSTVFPHADSVASS 464
           T NSI  N+T  I +  II+ + +  + SS +  +T I +  +ST+     S+ +S
Sbjct: 419 TINSIKINNTTIISSTIIITIIALT-ISSSTIIIITTIIIIISSTIVITTSSIVTS 473


>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
          Length = 2155

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 240  KLPEEEYSQNPQFKAHVINLMTSLNLAVNN-LNQPEIVAAMMTKLGESHRRRQIKEKNFH 416
            K+ EEE   N   K +V  L + L L+V   L    I+  +   L E+   +QIK++  H
Sbjct: 1076 KIIEEE---NSALKLNVEALESELQLSVKEKLENEHILRGLREDLQEAMSDKQIKDRALH 1132

Query: 417  ELK 425
            +L+
Sbjct: 1133 DLR 1135


>SB_43297| Best HMM Match : Astacin (HMM E-Value=3.5e-31)
          Length = 716

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 395 DQGEEFS*AKRSYSETVHRCTTFGRRHTVSVGEDCRIL 508
           +QG + S  +RS+S         GR+  +S+G DC+I+
Sbjct: 250 EQGIKLS--RRSWSSCYSDVGRIGRKQRISIGADCKIM 285


>SB_27037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 115 RYTQFKNHGPPSTPTLLQP-AVNY*ED 192
           R+ +  NHGPPSTP   +P A N  E+
Sbjct: 13  RFLRTLNHGPPSTPDCTKPMATNVNEE 39


>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
          Length = 442

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 440 TVHRCT-TFGRRHTVSVGEDCRILVQAYICHIE*PGRDKITDTYK 571
           T  RC+ T  + H    G DC ++ QA +C+   P    +T   K
Sbjct: 302 TTMRCSPTVDKCHQFCPGGDCNLICQAKLCYPHCPSGGCVTSNIK 346


>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
          Length = 489

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +2

Query: 440 TVHRCT-TFGRRHTVSVGEDCRILVQAYICHIE*PGRDKITDTYK 571
           T  RC+ T  + H    G DC ++ QA +C+   P    +T   K
Sbjct: 302 TTMRCSPTVDKCHQFCPGGDCNLICQAKLCYPHCPSGGCVTSNIK 346


>SB_55225| Best HMM Match : efhand (HMM E-Value=5.7e-12)
          Length = 828

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/46 (41%), Positives = 20/46 (43%)
 Frame = +1

Query: 22  KESKSWAPGLATCGGVGIRTW*TRSPGSRGERYTQFKNHGPPSTPT 159
           KE KSW PG     G G     T  PG  G  YT    +GP  T T
Sbjct: 538 KEPKSWEPGYTNPPGYG--PGYTNPPG-YGPGYTNPPGYGPGYTNT 580


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,590,306
Number of Sequences: 59808
Number of extensions: 420792
Number of successful extensions: 1099
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)