Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f23
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)                 30   1.1  
SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21)                29   1.9  
SB_31270| Best HMM Match : rve (HMM E-Value=0.0043)                    29   2.5  
SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  

>SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)
          Length = 720

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -3

Query: 261 STGRRRVPHVDSLRAGCRSTSHNEAP*QSIIWSNTAD--CQTVCSASRAGVS---HFISR 97
           ST RR+   V  LR+ CR    + A  ++     TAD   ++  SASR+ +S   H +SR
Sbjct: 575 STERRKRRFVSPLRSSCRGRRRDSAH-KATACGRTADQGARSGDSASRSRISAVIHEVSR 633

Query: 96  HGDDR 82
           H D R
Sbjct: 634 HLDTR 638


>SB_38871| Best HMM Match : DUF590 (HMM E-Value=5.5e-21)
          Length = 319

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 246 GACR*TRQGRPSPGSRGVPVRDRPPC 323
           GAC    QGR  PG RGV +RD   C
Sbjct: 104 GACISGIQGRVHPGYRGVHIRDTGAC 129



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 246 GACR*TRQGRPSPGSRGVPVRDRPPCRGR 332
           GAC    Q R  PG RGV +RD   C  R
Sbjct: 127 GACTSGIQERAHPGYRGVHIRDTGACTYR 155



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 246 GACR*TRQGRPSPGSRGVPVRDRPPC 323
           GAC    QGR   G RGV +RD   C
Sbjct: 81  GACTSGIQGRAHTGYRGVHIRDTGAC 106


>SB_31270| Best HMM Match : rve (HMM E-Value=0.0043)
          Length = 479

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 287 SRARTALTRLPAGAVYLTLTACELAVAARVTTKLRNSLSFGAILPIA 147
           S  R  LTRL   ++ L +T CE  +  R      N ++ G +LPIA
Sbjct: 260 SNIRGVLTRLQVHSLCLQITKCEFVL--REVEYKGNKITQGGVLPIA 304


>SB_41802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 305 NWDTPTSRARTALTRLPAGAVYLTLTACELAVAARVTT 192
           +WD   S A   L   P G+  + L AC+L    R TT
Sbjct: 35  SWDALVSLAEDDLKGCPRGSSRVDLQACKLGTGRRFTT 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,831,687
Number of Sequences: 59808
Number of extensions: 286624
Number of successful extensions: 754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)