Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f22
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1)             30   1.6  
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            29   2.1  
SB_19047| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_54039| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_23912| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   4.3  
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1)
          Length = 1118

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/69 (23%), Positives = 36/69 (52%)
 Frame = +1

Query: 166 LMEISIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTITNDSEMETKSVIP 345
           L+  S++ + + I N  L++     +KLGE+++E  P++ +      T+ + ++   V+ 
Sbjct: 374 LINDSVEVNDVFIVNEDLIQV---HYKLGEKFQELKPHTNVVVAAMTTSYARLKLYEVMD 430

Query: 346 DTGAKCGRH 372
             G +C  H
Sbjct: 431 GLGERCLYH 439


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 169 MEISIDGDTMTI--KNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTITNDSEMETKSVI 342
           M +++D  TMT+  K   +   + H F    + EE + N ++    T+    E+    ++
Sbjct: 695 MSMAVDHSTMTVSTKPRIVFGGIRHNFLHATKTEEFLQNKVLTDAETLKVALEILDSEIV 754

Query: 343 PD 348
           PD
Sbjct: 755 PD 756


>SB_19047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 758

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 331 KSVIPDTGAKCGRHYQFTDEECIVTLTHENASVSG 435
           KS IP+TGA C +H+   D+     +   + S+SG
Sbjct: 507 KSAIPETGAPCPKHFS-ADDAVFPCMVKVDQSLSG 540



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 331 KSVIPDTGAKCGRHYQFTD 387
           KS IP+TGA C +H+   D
Sbjct: 355 KSAIPETGAPCPKHFSADD 373


>SB_54039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 265 EKMPNSIIKSVTTITNDSEMETKSVIPDTG 354
           EK  N I   + T+ +D+E+  + + PD G
Sbjct: 67  EKFKNGIPSDILTVESDNELSMQDITPDVG 96


>SB_23912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 24.6 bits (51), Expect(2) = 4.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 121 GVPFMGRKMMSMSSPLMEISIDG 189
           G PFMG  + S +  L ++++DG
Sbjct: 292 GFPFMGANIASRAKELKKMALDG 314



 Score = 22.2 bits (45), Expect(2) = 4.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 250 GEEYEEKMPNSIIKSVTTITNDSEMETKSVIPDT 351
           G+  +EKMPN   K+ T+ +     +T +V  +T
Sbjct: 314 GKFDDEKMPNLKTKTKTSNSTHGPFKTYTVTTET 347


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = +1

Query: 229  VEHKFKLGEEYEEKMPNSIIKSVTTITNDSEMETKSVIPDTGAKCGRH 372
            ++  +KLGE+++E  P++ +      T+ + ++  +V+   G +C  H
Sbjct: 1049 IQVHYKLGEKFQELKPHTNVVVAAFTTSFARLKLYNVMDRLGERCLYH 1096


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +1

Query: 127 PFMGRKMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFKLGE---EYEEKMPNSIIKSV 297
           PFM +    +SSP  + S   +T   K SSL     H   L +       ++ N + K+V
Sbjct: 155 PFMSKGPERISSPKRKSSFTDETTADKTSSLQLHRNHSQNLAQAILNSRNRIANVLFKAV 214

Query: 298 TTITNDSE 321
           T  +  S+
Sbjct: 215 TKPSRSSQ 222


>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1230

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 193 TMTIKNSSLLRTVEHKFK----LGEEYEEKMPNSII-KSVTTITNDSEMET 330
           T  I+N++++ T+   FK    +G EY    PN++  K +T   N    ET
Sbjct: 6   TRVIRNTAVILTILGVFKFQWWIGNEYPNSKPNNVFPKELTIFKNIKPTET 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,986,055
Number of Sequences: 59808
Number of extensions: 348123
Number of successful extensions: 621
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)