Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f19
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   1.1  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   2.6  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    24   3.5  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    24   4.6  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    23   8.0  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    23   8.0  
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    23   8.0  

>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 236 HIRCILCRTYPFSTIKLHNVHKKSNYNNNKTTI 138
           HIR +L R Y FS       ++ S+++NN   I
Sbjct: 256 HIRVLLERDYKFSNDSYFTFYEGSSWHNNDAGI 288


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 91  PMLNGLTFSFFAKIENKVTIGKRC 20
           P+L  LTFS   +++N +T+ K C
Sbjct: 585 PLLAKLTFSHEEQVDNVLTLQKYC 608


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 275 FFNEQNFLMINKRHIRCILCRTYPFSTIKLHNVHKKSNYNNNKT 144
           FF    FL+  K  I   L  T P++   L  + K + Y +  T
Sbjct: 168 FFKASKFLLSEKGVIVITLAETKPYTLWNLKGLAKDAGYTSLMT 211


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1088

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 169  NQTIITIKLQLEQCFS--YN*LLIAYFKPMLNGLTFSFFAKIEN 44
            N TI+T  L+LE C +      +      +++   +S F KIE+
Sbjct: 931  NSTIVTTNLKLETCLNEWERRFVFQGLSELVDSSLYSIFYKIES 974


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -3

Query: 178 YIRN--QTIITIKLQLEQCFS 122
           Y++N   T+IT K QLE  FS
Sbjct: 385 YVKNLDDTVITCKSQLEDLFS 405


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 248 INKRHIRCILCRT 210
           INKR IRC+ C +
Sbjct: 44  INKRSIRCLSCHS 56


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 203 MDTFYRGYIGYGVC*SLKN 259
           +D  YR Y+ Y    SLKN
Sbjct: 247 VDLLYRDYVSYDTTISLKN 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,063,325
Number of Sequences: 5004
Number of extensions: 16483
Number of successful extensions: 42
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)