Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f19
         (279 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    29   0.49 
U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical pr...    25   6.1  
Z83129-8|CAB76728.1|  332|Caenorhabditis elegans Hypothetical pr...    25   8.0  
AL132841-6|CAB60331.2|  494|Caenorhabditis elegans Hypothetical ...    25   8.0  
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ...    25   8.0  

>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
           protein F19C7.3 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 203 FSTIKLHNVHKKS--NYNNNKTTIRAMF*L*LAFDRIFQA-HVE 81
           ++T KL N+HKKS  N+NN+K  +  +      FD +F   HV+
Sbjct: 71  YNTTKLDNIHKKSIFNFNNSKKCLTLL----TRFDDLFSIDHVD 110


>U13644-4|AAB52682.1|  412|Caenorhabditis elegans Hypothetical
           protein F56D2.3 protein.
          Length = 412

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 266 EQNFLMINKR-HIRCILCRTYPFSTIKLHNVHKKSNYNNNKTTI 138
           EQ   M  K+ HIR +L         K  ++HK+    NNK T+
Sbjct: 252 EQRMNMEQKQMHIRRVLANESDEIRSKFADIHKRLIMKNNKMTV 295


>Z83129-8|CAB76728.1|  332|Caenorhabditis elegans Hypothetical
           protein W06G6.13 protein.
          Length = 332

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 123 LKHCSNCSFIVIIV*FLMYVV*LY--SRKWIRSTEDTSDM 236
           +KH  N  F++ IV F++ +  LY  +RK +R++   S M
Sbjct: 13  VKHVYNIQFVISIVGFILTIPHLYILTRKSMRTSSINSIM 52


>AL132841-6|CAB60331.2|  494|Caenorhabditis elegans Hypothetical
           protein Y15E3A.3 protein.
          Length = 494

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 203 FSTIKLHNVHKKSNYNNN 150
           FSTI  H + KKSN+  N
Sbjct: 346 FSTILAHEITKKSNFMTN 363


>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.2 protein.
          Length = 1061

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 215 RTYPFSTIKLHNVHKKSNYNNNKTTIRA 132
           RT+ FST+K     ++S+ N  +T +R+
Sbjct: 28  RTHLFSTVKQEKQRRESHDNKYETAVRS 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,723,864
Number of Sequences: 27780
Number of extensions: 89956
Number of successful extensions: 216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)