Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f19
         (279 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26740.1 68417.m03853 embryo-specific protein 1 (ATS1) identi...    26   3.2  
At5g55240.1 68418.m06885 caleosin-related family protein / embry...    26   4.3  
At5g36200.1 68418.m04364 F-box family protein contains Pfam PF00...    25   7.5  
At3g45800.1 68416.m04957 hypothetical protein                          25   7.5  
At5g63540.1 68418.m07975 expressed protein  ; expression support...    25   9.9  
At5g42410.1 68418.m05163 auxin-responsive family protein similar...    25   9.9  
At5g06905.1 68418.m00780 cytochrome P450 family protein similar ...    25   9.9  
At1g28350.1 68414.m03483 tRNA synthetase class I (W and Y) famil...    25   9.9  

>At4g26740.1 68417.m03853 embryo-specific protein 1 (ATS1) identical
           to embryo-specific protein 1 [Arabidopsis thaliana]
           GI:3335169
          Length = 245

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 206 PFSTIKLHNVHKKSNYNNNKT 144
           PF  I +HN+HK  + +++KT
Sbjct: 124 PFFPIYIHNIHKSKHGSDSKT 144


>At5g55240.1 68418.m06885 caleosin-related family protein /
           embryo-specific protein, putative strong similarity to
           embryo-specific protein 1 [Arabidopsis thaliana]
           GI:3335169; contains Pfam profilePF05042: Caleosin
           related protein
          Length = 243

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 206 PFSTIKLHNVHKKSNYNNNKT 144
           PF  I +HN+HK  + +++KT
Sbjct: 123 PFFPIYIHNIHKAKHGSDSKT 143


>At5g36200.1 68418.m04364 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to unknown protein
           (pir||T00841)
          Length = 471

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 197 TIKLHNVHKKSNYNNNKTTI 138
           ++ LH +HK+++ NN K++I
Sbjct: 72  SVNLHRIHKENDDNNIKSSI 91


>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 230 RCILCRTYPFSTIKLHNVHKKSNYNN 153
           R  LC  Y F T+K +  +K++ Y N
Sbjct: 38  RVFLCNRYIFLTLKYYKTNKENCYIN 63


>At5g63540.1 68418.m07975 expressed protein  ; expression supported
           by MPSS
          Length = 602

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 240 TPYPMYPL*NVSIFDYK 190
           TPYP+YP  +VS  DY+
Sbjct: 81  TPYPVYPSESVSGNDYE 97


>At5g42410.1 68418.m05163 auxin-responsive family protein similar to
           auxin-induced protein SAUR (GI:3043536) [Raphanus
           sativus]
          Length = 111

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 194 IKLHNVHKKSNYNNN 150
           IKL N+HK +N++NN
Sbjct: 85  IKLVNLHKTTNHHNN 99


>At5g06905.1 68418.m00780 cytochrome P450 family protein similar to
           SP|Q42798|C931_SOYBN Cytochrome P450 93A1 (EC 1.14.-.-)
           {Glycine max}; contains Pfam profile PF00067: Cytochrome
           P450
          Length = 521

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 79  GLTFSFFA-KIENKVTIGKRCEVNSS 5
           GL F+    KI +K+ +GKRC  NS+
Sbjct: 171 GLEFTALTTKILSKMVMGKRCRQNSN 196


>At1g28350.1 68414.m03483 tRNA synthetase class I (W and Y) family
           protein contains Pfam profile: PF00579 tRNA synthetases
           class I (W and Y)
          Length = 824

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 244 TNAISDVSSVERIHFRL*SYTTYIRNQTIITIKLQLEQCFSYN*LLI 104
           + A++ +    R HF+  S    +  Q  + IK+    CF Y+ LLI
Sbjct: 365 SKALNKILQPVRDHFKTNSRAKNLLKQVKV-IKISFHSCFRYHQLLI 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,181,027
Number of Sequences: 28952
Number of extensions: 75038
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 231676056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)