Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f18
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    29   0.93 
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    26   5.0  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   8.7  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    25   8.7  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   8.7  

>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
 Frame = +1

Query: 217 LPLRICCFILGYLTM----FTNVCNTGLLFTLTTYIGADTSTLPALQSSETPLISGIEVV 384
           L L  CC +LG +++    +T++   G LF       A       + S+ +PL   I V+
Sbjct: 74  LILNYCCELLGGISVTRFVYTSISTMGGLFVYLIAKQARVLDPNQVLSTCSPL--WISVI 131

Query: 385 LLMTVINAAWLLVNIACVVGLHRRRPGNIKFYVLFAACRLVLVFAGLVYLTITVRSPALM 564
            L+   N    L  IAC   +       +  Y  FA+C    ++A  + LT+ +   AL+
Sbjct: 132 YLL---NPLTFLPGIACSADMILNFTTLMTIY--FASCGSYAIYACCMALTVFINPNALL 186

Query: 565 L 567
           L
Sbjct: 187 L 187


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 306 SGQSKQQPGIADIGEHGQVTKDEATNPQWKAVTVFFAQTRSR 181
           SG + ++ G+AD  E      +   N +W A T  +  T +R
Sbjct: 501 SGTADEEEGVADSFEALADVSESVVNGKWVAETFIYTTTAAR 542


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 449 CSPTTQAMLTSNHAAFITVIRSTTSI 372
           C PTT ++L  +   F  VIR  TS+
Sbjct: 213 CVPTTNSLLKKSKIPFALVIRPYTSL 238


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 523 LVYLTITVRSPALMLHRLDIVVXSFFIMVYNTYARQLENEKQQIQARPEN 672
           LVY ++  R+ + + HRL+  V    I  Y ++   L+NE  ++   P+N
Sbjct: 58  LVYRSL--RTTSNICHRLNADVLGQLIKKYYSFDNSLKNELLELIDMPQN 105


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 712  PLCEDR*MRRP*SGFQVGLEFAASHSP 632
            P+ +D     P SGF+ G  F A++SP
Sbjct: 980  PMAKDAGDTAPASGFKSGFSFGANNSP 1006


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,779
Number of Sequences: 5004
Number of extensions: 63453
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)