Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f18
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0807 - 20712066-20712290,20712750-20713339,20713415-207134...    31   0.97 
10_08_0784 + 20529526-20529604,20529996-20530562,20530687-205316...    29   3.0  
03_04_0006 + 16257288-16259522                                         29   3.9  
07_01_0563 + 4178176-4178295,4178391-4178834                           29   5.2  
02_02_0580 + 11757667-11758258,11758419-11758572,11758682-117587...    29   5.2  
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130...    28   6.9  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    28   6.9  

>10_08_0807 -
           20712066-20712290,20712750-20713339,20713415-20713463,
           20713669-20713821
          Length = 338

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 52  IQNIPNFDKMTK-PIPYNTFPKEPNAREQWIDVTGRGNWKQ 171
           + ++PN D++   P          N    W DV+GR +WKQ
Sbjct: 224 LSHLPNADRLAADPRTLRMLQSRRNVSRWWADVSGRESWKQ 264


>10_08_0784 +
           20529526-20529604,20529996-20530562,20530687-20531639,
           20532292-20532479,20532578-20533013
          Length = 740

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +1

Query: 358 PLISGIEVVLLMTVINAAWLLVNIACVVGLHRRRPGNIKFYVLFAACRLVLVFAGLVYLT 537
           PLI G+  ++ M++I A  +      V     RRP  I   VL+    LV+++A  VY+ 
Sbjct: 42  PLIEGL--IVAMSLIGATIITTFSGAVADSFGRRPMLIASAVLYFVSGLVMLWAPNVYVL 99

Query: 538 ITVR 549
           +  R
Sbjct: 100 LLAR 103


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 606 GVQYLRQTAGE*EAANSSPT*KPDQGRLIHRSSHNG 713
           G Q  R TAG   + N+ P+  PD GRL+ RS+ +G
Sbjct: 483 GRQQRRLTAGA--SNNAFPSSSPDGGRLVFRSTRDG 516


>07_01_0563 + 4178176-4178295,4178391-4178834
          Length = 187

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 410 AAFITVIRSTTSIPLMRGVSEDCRAGKVL 324
           AA  TV+ + + +PL+RG S + R+G V+
Sbjct: 126 AATATVLSAASLVPLLRGESAEARSGGVM 154


>02_02_0580 +
           11757667-11758258,11758419-11758572,11758682-11758756,
           11758836-11758980,11759222-11759287,11759347-11759500,
           11761506-11761624
          Length = 434

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 204 FFAQTRSRR*PLFPVSSTCHVNPLFPGVRFFRKRVVGNR 88
           FF+ + SR     P+S+ CH+  +  G+ FF+  +  +R
Sbjct: 237 FFSCSFSREITFSPISALCHLGVMVLGLAFFKDSIPQSR 275


>08_02_1566 +
           27909297-27909390,27909542-27909645,27912899-27913098,
           27913214-27913314,27913427-27914130,27914671-27914834,
           27914941-27915100
          Length = 508

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 526 VYLTITVRSPALMLHRLDIVVXSFFIMVYNTYARQ 630
           VY+ +  R P  +LH +++++   F  +Y+  ARQ
Sbjct: 402 VYMLVKYRLPLEILHLVNLLLCGLFSRLYSNLARQ 436


>01_03_0303 +
           14792842-14792949,14793659-14793760,14794657-14794800,
           14794906-14794986,14795078-14795147,14795267-14795337,
           14795427-14795594,14796030-14796074,14796449-14796511,
           14796594-14796869,14797858-14797971,14798099-14798225,
           14798315-14798484,14798743-14798841,14799577-14799630,
           14801487-14801522,14801741-14801844,14801952-14802186,
           14802377-14802609,14802846-14803346,14803422-14803716,
           14805796-14805881,14806952-14807064,14807303-14807385,
           14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 385 LLMTVINAAWLLVNIACVVGLHRRRPGN-IKFYVLFAACRLVLVFAGLVYLTITVRSPAL 561
           LL  +++  W   N+A + G +    G  ++ Y    AC +  +F  L  L IT++ P+ 
Sbjct: 458 LLQQLLSLKWSQPNLAVIHGHYLDSLGPFLRHYPDAVACIVNKLFEILTSLPITIQDPSN 517

Query: 562 MLHRLDIVVXSFFIMV 609
              +  + + S FI +
Sbjct: 518 NFRQARLQICSSFIRI 533


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,900,602
Number of Sequences: 37544
Number of extensions: 434305
Number of successful extensions: 1100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)