Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f18
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11017| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)          29   5.3  
SB_39705| Best HMM Match : Keratin_B2 (HMM E-Value=3.5)                28   7.0  
SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9)                   28   7.0  
SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_36632| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_11017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 571 RLDIVVXSFFIMVYNTYARQLENEKQQIQARPENQIRDVSFI 696
           +LD +    F M+Y  Y R+  +       RP ++IR++ FI
Sbjct: 93  QLDKIRKHCFKMLYLKYCRKASDIDSDFDTRPRSEIRNIRFI 134


>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
          Length = 919

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 28/95 (29%), Positives = 43/95 (45%)
 Frame = +1

Query: 232 CCFILGYLTMFTNVCNTGLLFTLTTYIGADTSTLPALQSSETPLISGIEVVLLMTVINAA 411
           CC +  +L  F    NT LLF+    +      + + +S    L+S    V +  ++ AA
Sbjct: 9   CCNVT-WLKTFHMFFNTILLFSGIAILAVGIWVITS-RSQYNSLLSNDNYVTVPGLMIAA 66

Query: 412 WLLVNIACVVGLHRRRPGNIKFYVLFAACRLVLVF 516
             LV I CVVG       N +F ++     LVL+F
Sbjct: 67  GCLVIIVCVVGCVAVIKEN-RFILVSYLIMLVLIF 100


>SB_39705| Best HMM Match : Keratin_B2 (HMM E-Value=3.5)
          Length = 109

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 363 HQWDRSRASDDSNKCCMVACQHR 431
           H W    A+D  +KCC V C  +
Sbjct: 35  HSWTDCNATDRQSKCCHVLCDRK 57


>SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9)
          Length = 225

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
 Frame = +1

Query: 217 LPLRICCFILGYLTMFTNVCNTGLLFTLTTYIGADTSTLPALQSSETPLISGIEVVLLMT 396
           L L  C   + Y+T+ +  C TG+L+     +   T  +P +  +    + G+  + L +
Sbjct: 49  LALVTCVTGVPYITLASVTCVTGVLYITLASVTCFTG-VPHITLASVTCVKGVPYITLAS 107

Query: 397 VINAAWL----LVNIACVVGLHRRRPGNIKFY--VLFAACRLVLVFAGLVYLTIT 543
           V     +    L ++ CV G+      ++     V +     V    G+ Y+T+T
Sbjct: 108 VTCVTGVPYITLTSVTCVTGVPYITLASVACVTGVPYITLASVACVTGVPYITLT 162


>SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +1

Query: 433 CVVGLHRRRPGNIKFYVLFAACRLVLVFA-GLVYLTITVRSP 555
           C +     R   I FY L A C LV +F    +Y+ I   SP
Sbjct: 125 CFISYTESRSYIITFYTLVAPCCLVTIFCYSRIYIAIKKNSP 166


>SB_16827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 388 LMTVINAAWLLVNIACVVGLHRRRPGNIK 474
           +  + N +W+LV +AC++   RR+P  +K
Sbjct: 24  ISAISNLSWILVGLACLLQEVRRKPQPLK 52


>SB_13707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 154 RGNWKQRLSSTSSLGKKYCHCLPL 225
           RGNW+   +ST SL  K CH + L
Sbjct: 176 RGNWRNVKTSTFSLMAKSCHDIDL 199


>SB_36632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -1

Query: 464 PGRLLCSPTTQAMLTSNHAAFITVIRSTTSIPLMRGVSEDCRAGKVLVSAPM*VVRVNNS 285
           P   LC+P  Q++ TS H A    ++     P+ +  S+   +G +  + P+ +V +  S
Sbjct: 117 PNLTLCAPVKQSISTSVHTA--PYVKYENGYPVYKAQSKP-TSGTLWKNGPLGIVFLERS 173

Query: 284 PVLQTL 267
             LQ L
Sbjct: 174 QPLQDL 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,032,861
Number of Sequences: 59808
Number of extensions: 501271
Number of successful extensions: 1178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)