Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f18
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51050.1 68416.m05590 FG-GAP repeat-containing protein              30   1.4  
At2g03070.1 68415.m00260 expressed protein                             28   5.7  
At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containi...    28   7.6  
At5g18700.1 68418.m02219 protein kinase-related contains protein...    27   10.0 
At1g78960.1 68414.m09206 lupeol synthase, putative / 2,3-oxidosq...    27   10.0 
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    27   10.0 

>At3g51050.1 68416.m05590 FG-GAP repeat-containing protein
          Length = 698

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +3

Query: 516 CWASVPDNNR-QESSFNVTPLGHCCXIFLHHGVQYLRQTAGE*EAANSSPT*KPDQGRLI 692
           CWA        +E  FNV+   H    FLH+G  Y R  A     A  + T +     LI
Sbjct: 462 CWAVATSGVPIREQLFNVSICHHSPFNFLHYGGDYSRHFA----QARDTSTLEIATPILI 517

Query: 693 HR-SSHNGRQETHSDLIY 743
            R   H  R+ +H D+I+
Sbjct: 518 PRDDGHKHRKGSHGDVIF 535


>At2g03070.1 68415.m00260 expressed protein 
          Length = 524

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 64  PNFDKMTKPIPYNTFPK 114
           PNFD  T P+PY+  P+
Sbjct: 268 PNFDNTTSPLPYSNSPR 284


>At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 857

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 162 VSSTCHVNPLFPGVRFFR 109
           +SS CHV  +  GVRFFR
Sbjct: 651 ISSCCHVGDVDEGVRFFR 668


>At5g18700.1 68418.m02219 protein kinase-related contains protein
           kinase domain, INTERPRO:IPR000719
          Length = 1366

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 112 KEPNAREQWIDVTGRGNWKQRLS 180
           K+P  R QW D+ G   WK +++
Sbjct: 236 KDPAQRIQWADLCGHAFWKSKIN 258


>At1g78960.1 68414.m09206 lupeol synthase, putative /
           2,3-oxidosqualene-triterpenoid cyclase, putative similar
           to lupeol synthase GI:1762150 from [Arabidopsis
           thaliana], 2,3-oxidosqualene-triterpenoid cyclase
           [Arabidopsis thaliana] GI:2738027
          Length = 763

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 321 YQYLTRPA-VLGDAPHQWDRSRASDDSNKCCMV 416
           Y+++++ A  L D  H W  S  + ++ KCCM+
Sbjct: 465 YRHISKGAWTLSDRDHGWQVSDCTAEALKCCML 497


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +1

Query: 40   LSVRIQNIPNFDKMTKPIPYNTFPKEPNAREQWIDVTGRGN-------WKQRLSSTSSLG 198
            +++ + N+ N + +T  +P   FP+  ++  Q   V    N       WK+R+  +S LG
Sbjct: 4829 MNLMMTNMANGETLTDNLPKMEFPQNQSSTAQQTKVNPYRNVGDALKEWKERVRISSDLG 4888

Query: 199  KK 204
            +K
Sbjct: 4889 EK 4890


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,675,837
Number of Sequences: 28952
Number of extensions: 345052
Number of successful extensions: 914
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)