Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f12
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    51   1e-07
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    30   0.37 
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   1.1  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    26   6.0  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   7.9  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   7.9  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   7.9  

>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 26/109 (23%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
 Frame = +2

Query: 371 KSPAHIDKQVESLEMKLDPES-CKLIFCLKCKHGIVKTHFVSILDCKAMQAVYTKDTVPN 547
           +S +  D  VE++++ +   S C++IF   CKHG++KT+ +S    + + AV+ K    N
Sbjct: 114 ESASRKDVIVENVQISISTGSECRIIFKFLCKHGVIKTYKISYEQTQTLHAVFDKSLSHN 173

Query: 548 RITSPQRILNETLNSFQTSDDQVTLEATTKSLVIKNYIDS---NMDLTK 685
                 +IL +    F    +++T++   + +++ ++ +    N D+ K
Sbjct: 174 NFQINSKILKDLTEHFGQRTEELTIQPLQERVLLTSFTEEVVHNRDILK 222


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 523 VH*RYSTKQNYFTSKNTKRNTEQLPN 600
           V+ RYS   + ++SKN  +NTE LPN
Sbjct: 265 VNTRYSMSWDCYSSKNIPKNTEALPN 290


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
 Frame = +2

Query: 320 NEGLKCKISMKSALNA---FKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHGIVKTHFV 490
           +E LK K+   +A+     FKS   +DK V+ L+  +D  + K++   K    I + +  
Sbjct: 84  DELLKKKVKELTAMKKTVPFKSEVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRT 143

Query: 491 --SILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEA 628
             S ++  A+Q   + DT+ N +   +  LN++  S + SD  V + +
Sbjct: 144 RKSFVELNALQT--SIDTIRNELNELRDQLNDS-ESKKLSDKFVEIRS 188


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 524 YTKDTVPNRITSPQRILNETLNSFQTSDDQ 613
           Y ++T  NR++S Q     TLN+FQ + +Q
Sbjct: 227 YKQNTTNNRVSSFQNSQYSTLNNFQNNSNQ 256


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 356 ALNAFKSPAHIDKQVESLEMKLDPESCKL 442
           ALN   SPA I ++++S++ +++  S KL
Sbjct: 119 ALNNSLSPAEIREKIQSIDKEIEETSSKL 147


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 498 NIDTKCVLTIPCLHFKQNINLQDSGSNFISKLSTCLSM*AGDLKAFKADFIDIL 337
           NID +    +P LHFK+ + + DS  N  + L+    M A +L+  + D   ++
Sbjct: 817 NIDLQNNAVVPELHFKEGM-VYDSLENAYTYLAESKRMLANELQMKQEDLEKVI 869


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 648 ITSDLVVASNVTWSSEVWKLFSVS-FSIL*GEVILFGTVSLV 526
           I S  +  S+++W  E W L  +S  S+L G V L  T + V
Sbjct: 182 IASGFIAGSSISWRWEFWILLMLSGVSLLAGVVFLKETYAPV 223


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 447 NINLQDSGSNFISKLSTCLSM*AGDLKAFKADFIDI 340
           N+NL DS     S L TC+     +L+   + ++D+
Sbjct: 208 NVNLSDSQKTIQSCLLTCIESTMRELRRLNSAYLDM 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,308
Number of Sequences: 5004
Number of extensions: 49110
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)