Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f12
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29057| Best HMM Match : Rad9 (HMM E-Value=9.3e-10)                 112   2e-25
SB_44148| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   1e-09
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_29057| Best HMM Match : Rad9 (HMM E-Value=9.3e-10)
          Length = 336

 Score =  112 bits (270), Expect = 2e-25
 Identities = 58/161 (36%), Positives = 92/161 (57%), Gaps = 4/161 (2%)
 Frame = +2

Query: 215 ILLRTLNAAESAYAMIXXXXXXXXXXXXXXXXTEDN----EGLKCKISMKSALNAFKSPA 382
           I +RT+N + SAYA                    D+    + +KCKI+MKS L+AFKS  
Sbjct: 59  IAIRTVNQSRSAYACFMFHSCFFLSYDDGRDELPDSSQVDDMVKCKIAMKSCLSAFKSVN 118

Query: 383 HIDKQVESLEMKLDPESCKLIFCLKCKHGIVKTHFVSILDCKAMQAVYTKDTVPNRITSP 562
            ++K V+  ++ L  +  +L+F   CKHGI KT+ ++  +C+++QAV+TKD  PN I++ 
Sbjct: 119 TLEKSVDKCQIDLSIKEARLVFLFYCKHGITKTYNLTFQECESLQAVFTKDLCPNFISAQ 178

Query: 563 QRILNETLNSFQTSDDQVTLEATTKSLVIKNYIDSNMDLTK 685
            R+LNET+ +F  + D++TL    + L   NY +   DL K
Sbjct: 179 ARLLNETVYNFPNNLDELTLSVNPELLKATNYAEDEPDLNK 219


>SB_44148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 25/64 (39%), Positives = 43/64 (67%)
 Frame = +2

Query: 368 FKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHGIVKTHFVSILDCKAMQAVYTKDTVPN 547
           FKS   ++K V+  ++ L  +  +L+F   CKHGI KT+ ++  +C+++QAV+TKD  PN
Sbjct: 2   FKSVNTLEKSVDKCQIDLSIKEARLVFLFYCKHGITKTYNLTFQECESLQAVFTKDLCPN 61

Query: 548 RITS 559
            I++
Sbjct: 62  FISA 65


>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1662

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = -2

Query: 654  FFITSDLVVASNVTWSSEVWKLFSVSFSIL*GEVILFGTVSLVYTACIALQSNIDTKCV 478
            F +   LVVAS+V + S  + L S++     G  I + ++++ + ACI +    D++CV
Sbjct: 1239 FSVAEMLVVASHVFFLSAAFALHSITIQNHIGPGIPYQSLAVDWLACI-IACEEDSECV 1296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,577,737
Number of Sequences: 59808
Number of extensions: 336532
Number of successful extensions: 712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)