Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10f12
(703 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53174-1|AAB39928.1| 391|Homo sapiens cell cycle checkpoint con... 134 3e-31
AY766122-1|AAU89725.1| 391|Homo sapiens RAD9 homolog A (S. pomb... 134 3e-31
BC014848-1|AAH14848.1| 391|Homo sapiens RAD9 homolog A (S. pomb... 133 5e-31
CR536508-1|CAG38746.1| 391|Homo sapiens RAD9A protein. 132 9e-31
BC068031-1|AAH68031.2| 426|Homo sapiens RAD9B protein protein. 94 4e-19
AY297459-1|AAQ62859.1| 414|Homo sapiens RAD9B protein. 94 4e-19
AK124109-1|BAC85774.1| 345|Homo sapiens protein ( Homo sapiens ... 71 4e-12
AL512408-3|CAI23484.1| 2285|Homo sapiens AT rich interactive dom... 30 9.2
AL512408-1|CAI23482.1| 1685|Homo sapiens AT rich interactive dom... 30 9.2
AL034380-9|CAI21623.1| 2285|Homo sapiens AT rich interactive dom... 30 9.2
AL034380-6|CAI21621.1| 1685|Homo sapiens AT rich interactive dom... 30 9.2
AK223275-1|BAD96995.1| 1181|Homo sapiens AT rich interactive dom... 30 9.2
AK074940-1|BAC11306.1| 754|Homo sapiens protein ( Homo sapiens ... 30 9.2
AK027655-1|BAB55270.1| 613|Homo sapiens protein ( Homo sapiens ... 30 9.2
AK027467-1|BAB55132.1| 375|Homo sapiens protein ( Homo sapiens ... 30 9.2
AK027442-1|BAB55114.1| 527|Homo sapiens protein ( Homo sapiens ... 30 9.2
AF521670-1|AAN03446.1| 1999|Homo sapiens SWI/SNF chromatin remod... 30 9.2
AF268913-1|AAK54505.1| 1685|Homo sapiens OSA1 nuclear protein pr... 30 9.2
AF265208-1|AAF75765.1| 1927|Homo sapiens SWI-SNF complex protein... 30 9.2
AF231056-1|AAG33967.1| 2285|Homo sapiens BRG1-Associated Factor ... 30 9.2
AF219114-1|AAG17549.2| 1939|Homo sapiens chromatin remodelling f... 30 9.2
>U53174-1|AAB39928.1| 391|Homo sapiens cell cycle checkpoint
control protein protein.
Length = 391
Score = 134 bits (324), Expect = 3e-31
Identities = 74/192 (38%), Positives = 112/192 (58%), Gaps = 1/192 (0%)
Frame = +2
Query: 110 MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIXXXXXXXXX 289
MKC V G NVKVL + VH+L+R GDELYLE L D + LRT+N++ SAYA
Sbjct: 1 MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQ 60
Query: 290 XXXXXXXTEDNEGLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHG 469
T + L+CKI MKS L+ F+S A ++K VE + L+ S +L+ L CK G
Sbjct: 61 YQAA---TPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFG 117
Query: 470 IVKTHFVSILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLE-ATTKSLV 646
+ KTH +S DC+++QAV+ + P+ + +P R+L E + F + +VTL + ++
Sbjct: 118 VRKTHNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAEVTLGIGRGRRVI 177
Query: 647 IKNYIDSNMDLT 682
+++Y + D T
Sbjct: 178 LRSYHEEEADST 189
>AY766122-1|AAU89725.1| 391|Homo sapiens RAD9 homolog A (S. pombe)
protein.
Length = 391
Score = 134 bits (324), Expect = 3e-31
Identities = 74/192 (38%), Positives = 112/192 (58%), Gaps = 1/192 (0%)
Frame = +2
Query: 110 MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIXXXXXXXXX 289
MKC V G NVKVL + VH+L+R GDELYLE L D + LRT+N++ SAYA
Sbjct: 1 MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQ 60
Query: 290 XXXXXXXTEDNEGLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHG 469
T + L+CKI MKS L+ F+S A ++K VE + L+ S +L+ L CK G
Sbjct: 61 YQAA---TPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFG 117
Query: 470 IVKTHFVSILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLE-ATTKSLV 646
+ KTH +S DC+++QAV+ + P+ + +P R+L E + F + +VTL + ++
Sbjct: 118 VRKTHNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAEVTLGIGRGRRVI 177
Query: 647 IKNYIDSNMDLT 682
+++Y + D T
Sbjct: 178 LRSYHEEEADST 189
>BC014848-1|AAH14848.1| 391|Homo sapiens RAD9 homolog A (S. pombe)
protein.
Length = 391
Score = 133 bits (322), Expect = 5e-31
Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 1/192 (0%)
Frame = +2
Query: 110 MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIXXXXXXXXX 289
MKC V G NVKVL + VH+L+R GDELYLE L D + LRT+N++ SAYA
Sbjct: 1 MKCLVTGGNVKVLGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQ 60
Query: 290 XXXXXXXTEDNEGLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHG 469
T + L+CKI MKS L+ F+S A ++K VE + L+ S +L+ L CK G
Sbjct: 61 YQAA---TPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFG 117
Query: 470 IVKTHFVSILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLE-ATTKSLV 646
+ KTH +S DC ++QAV+ + P+ + +P R+L E + F + +VTL + ++
Sbjct: 118 VRKTHNLSFQDCASLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAEVTLGIGRGRRVI 177
Query: 647 IKNYIDSNMDLT 682
+++Y + D T
Sbjct: 178 LRSYHEEEADST 189
>CR536508-1|CAG38746.1| 391|Homo sapiens RAD9A protein.
Length = 391
Score = 132 bits (320), Expect = 9e-31
Identities = 73/192 (38%), Positives = 111/192 (57%), Gaps = 1/192 (0%)
Frame = +2
Query: 110 MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIXXXXXXXXX 289
MKC V G NVK L + VH+L+R GDELYLE L D + LRT+N++ SAYA
Sbjct: 1 MKCLVTGGNVKALGKAVHSLSRIGDELYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQ 60
Query: 290 XXXXXXXTEDNEGLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHG 469
T + L+CKI MKS L+ F+S A ++K VE + L+ S +L+ L CK G
Sbjct: 61 YQAA---TPGQDLLRCKILMKSFLSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFG 117
Query: 470 IVKTHFVSILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLE-ATTKSLV 646
+ KTH +S DC+++QAV+ + P+ + +P R+L E + F + +VTL + ++
Sbjct: 118 VRKTHNLSFQDCESLQAVFDPASCPHMLRAPARVLGEAVLPFSPALAEVTLGIGRGRRVI 177
Query: 647 IKNYIDSNMDLT 682
+++Y + D T
Sbjct: 178 LRSYHEEEADST 189
>BC068031-1|AAH68031.2| 426|Homo sapiens RAD9B protein protein.
Length = 426
Score = 94.3 bits (224), Expect = 4e-19
Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 6/197 (3%)
Frame = +2
Query: 110 MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYA-MIXXXXXXXX 286
+KC + G VKV + V L+R DE +L+ + LR +N++ SAY ++
Sbjct: 2 LKCVMSGSQVKVFGKAVQALSRISDEFWLDPSKKGLALRCVNSSRSAYGCVLFSPVFFQH 61
Query: 287 XXXXXXXXTEDNE-----GLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFC 451
+NE LKCK+ MKS L F+ +++ +E + + CK++
Sbjct: 62 YQWSALVKMSENELDTTLHLKCKLGMKSILPIFRCLNSLERNIEKCRIFTRSDKCKVVIQ 121
Query: 452 LKCKHGIVKTHFVSILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEAT 631
+HGI +TH + + + +Q ++ K+ N + R+L + + F +S ++VTL T
Sbjct: 122 FFYRHGIKRTHNICFQESQPLQVIFDKNVCTNTLMIQPRLLADAIVLFTSSQEEVTLAVT 181
Query: 632 TKSLVIKNYIDSNMDLT 682
+ +K+ + +MDL+
Sbjct: 182 PLNFCLKSSNEESMDLS 198
>AY297459-1|AAQ62859.1| 414|Homo sapiens RAD9B protein.
Length = 414
Score = 94.3 bits (224), Expect = 4e-19
Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 6/197 (3%)
Frame = +2
Query: 110 MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYA-MIXXXXXXXX 286
+KC + G VKV + V L+R DE +L+ + LR +N++ SAY ++
Sbjct: 2 LKCVMSGSQVKVFGKAVQALSRISDEFWLDPSKKGLALRCVNSSRSAYGCVLFSPVFFQH 61
Query: 287 XXXXXXXXTEDNE-----GLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFC 451
+NE LKCK+ MKS L F+ +++ +E + + CK++
Sbjct: 62 YQWSALVKMSENELDTTLHLKCKLGMKSILPIFRCLNSLERNIEKCRIFTRSDKCKVVIQ 121
Query: 452 LKCKHGIVKTHFVSILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEAT 631
+HGI +TH + + + +Q ++ K+ N + R+L + + F +S ++VTL T
Sbjct: 122 FFYRHGIKRTHNICFQESQPLQVIFDKNVCTNTLMIQPRLLADAIVLFTSSQEEVTLAVT 181
Query: 632 TKSLVIKNYIDSNMDLT 682
+ +K+ + +MDL+
Sbjct: 182 PLNFCLKSSNEESMDLS 198
>AK124109-1|BAC85774.1| 345|Homo sapiens protein ( Homo sapiens
cDNA FLJ42115 fis, clone TESTI2003573, weakly similar
to Mus musculus cell cycle checkpoint control protein
Mrad9 gene. ).
Length = 345
Score = 70.9 bits (166), Expect = 4e-12
Identities = 32/118 (27%), Positives = 64/118 (54%)
Frame = +2
Query: 329 LKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHGIVKTHFVSILDCK 508
LKCK+ MKS L F+ +++ +E + + CK++ +HGI +TH + + +
Sbjct: 12 LKCKLGMKSILPIFRCLNSLERNIEKCRIFTRSDKCKVVIQFFYRHGIKRTHNICFQESQ 71
Query: 509 AMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEATTKSLVIKNYIDSNMDLT 682
+Q ++ K+ N + R+L + + F +S ++VTL T + +K+ + +MDL+
Sbjct: 72 PLQVIFDKNVCTNTLMIQPRLLADAIVLFTSSQEEVTLAVTPLNFCLKSSNEESMDLS 129
>AL512408-3|CAI23484.1| 2285|Homo sapiens AT rich interactive domain
1A (SWI-like) protein.
Length = 2285
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 2108 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 2138
>AL512408-1|CAI23482.1| 1685|Homo sapiens AT rich interactive domain
1A (SWI-like) protein.
Length = 1685
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 1508 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 1538
>AL034380-9|CAI21623.1| 2285|Homo sapiens AT rich interactive domain
1A (SWI-like) protein.
Length = 2285
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 2108 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 2138
>AL034380-6|CAI21621.1| 1685|Homo sapiens AT rich interactive domain
1A (SWI-like) protein.
Length = 1685
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 1508 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 1538
>AK223275-1|BAD96995.1| 1181|Homo sapiens AT rich interactive domain
1A (SWI- like) isoform a variant protein.
Length = 1181
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 1004 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 1034
>AK074940-1|BAC11306.1| 754|Homo sapiens protein ( Homo sapiens
cDNA FLJ90459 fis, clone NT2RP3001754. ).
Length = 754
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 577 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 607
>AK027655-1|BAB55270.1| 613|Homo sapiens protein ( Homo sapiens
cDNA FLJ14749 fis, clone NT2RP3002876, weakly similar to
Drosophila melanogaster eyelid (eld) mRNA. ).
Length = 613
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 436 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 466
>AK027467-1|BAB55132.1| 375|Homo sapiens protein ( Homo sapiens
cDNA FLJ14561 fis, clone NT2RM2002091, weakly similar to
Drosophila melanogaster eyelid (eld) mRNA. ).
Length = 375
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 198 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 228
>AK027442-1|BAB55114.1| 527|Homo sapiens protein ( Homo sapiens
cDNA FLJ14536 fis, clone NT2RM2001105, weakly similar to
Drosophila melanogaster eyelid (eld) mRNA. ).
Length = 527
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 350 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 380
>AF521670-1|AAN03446.1| 1999|Homo sapiens SWI/SNF chromatin remodeling
complex subunit OSA1 protein.
Length = 1999
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 1822 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 1852
>AF268913-1|AAK54505.1| 1685|Homo sapiens OSA1 nuclear protein
protein.
Length = 1685
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 1508 PNAVLSPQRLVLETLSKLSIQDNDVDLILAT 1538
>AF265208-1|AAF75765.1| 1927|Homo sapiens SWI-SNF complex protein p270
protein.
Length = 1927
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 1750 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 1780
>AF231056-1|AAG33967.1| 2285|Homo sapiens BRG1-Associated Factor 250a
protein.
Length = 2285
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 2108 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 2138
>AF219114-1|AAG17549.2| 1939|Homo sapiens chromatin remodelling factor
p250 protein.
Length = 1939
Score = 29.9 bits (64), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 542 PNRITSPQRILNETLNSFQTSDDQVTLEATT 634
PN + SPQR++ ETL+ D+ V L T
Sbjct: 1762 PNAVLSPQRLVLETLSKLSIQDNNVDLILAT 1792
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,036,003
Number of Sequences: 237096
Number of extensions: 1568590
Number of successful extensions: 2911
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2905
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -