Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f12
         (703 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061116-1|AAL28664.1|  456|Drosophila melanogaster LD10092p pro...    89   7e-18
AF124502-1|AAD31691.1|  456|Drosophila melanogaster DNA repair p...    89   7e-18
AF076846-1|AAC95528.1|  456|Drosophila melanogaster Rad9-like pr...    89   7e-18
AE014296-3070|AAF49221.1|  456|Drosophila melanogaster CG3945-PA...    89   7e-18
BT022159-1|AAY51785.1| 1224|Drosophila melanogaster IP01381p pro...    29   8.1  
BT009981-1|AAQ22450.1| 1281|Drosophila melanogaster RE54443p pro...    29   8.1  
AE014298-704|AAS65261.1| 1281|Drosophila melanogaster CG32767-PB...    29   8.1  
AE014298-703|AAF46005.2| 1281|Drosophila melanogaster CG32767-PA...    29   8.1  

>AY061116-1|AAL28664.1|  456|Drosophila melanogaster LD10092p
           protein.
          Length = 456

 Score = 88.6 bits (210), Expect = 7e-18
 Identities = 55/185 (29%), Positives = 92/185 (49%)
 Frame = +2

Query: 110 MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIXXXXXXXXX 289
           MK  + G N +V+A+ V +L++ G E+++E     + +R +NA +SA   I         
Sbjct: 1   MKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGSISFKRSMFEV 60

Query: 290 XXXXXXXTEDNEGLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHG 469
                     +    CKISMK  L  F++      +VE  E+ L      L   L+CK  
Sbjct: 61  YDMPP-----HSDFYCKISMKGCLAVFRNM----NEVEYCELNLLDNQTNLQVNLRCKLE 111

Query: 470 IVKTHFVSILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEATTKSLVI 649
             K   +SI+D + +      D +PN I    ++L +  N+F +S++++TLEA + S+V 
Sbjct: 112 TTKEATISIIDDQNINTNINTDQMPNIIRGDHKLLTDISNNFNSSEEELTLEANSGSVVA 171

Query: 650 KNYID 664
           KNYI+
Sbjct: 172 KNYIE 176


>AF124502-1|AAD31691.1|  456|Drosophila melanogaster DNA repair
           protein Rad9 protein.
          Length = 456

 Score = 88.6 bits (210), Expect = 7e-18
 Identities = 55/185 (29%), Positives = 92/185 (49%)
 Frame = +2

Query: 110 MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIXXXXXXXXX 289
           MK  + G N +V+A+ V +L++ G E+++E     + +R +NA +SA   I         
Sbjct: 1   MKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGSISFKRSMFEV 60

Query: 290 XXXXXXXTEDNEGLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHG 469
                     +    CKISMK  L  F++      +VE  E+ L      L   L+CK  
Sbjct: 61  YDMPP-----HSDFYCKISMKGCLAVFRNM----NEVEYCELNLLDNQTNLQVNLRCKLE 111

Query: 470 IVKTHFVSILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEATTKSLVI 649
             K   +SI+D + +      D +PN I    ++L +  N+F +S++++TLEA + S+V 
Sbjct: 112 TTKEATISIIDDQNINTNINTDQMPNIIRGDHKLLTDISNNFNSSEEELTLEANSGSVVA 171

Query: 650 KNYID 664
           KNYI+
Sbjct: 172 KNYIE 176


>AF076846-1|AAC95528.1|  456|Drosophila melanogaster Rad9-like
           protein protein.
          Length = 456

 Score = 88.6 bits (210), Expect = 7e-18
 Identities = 55/185 (29%), Positives = 92/185 (49%)
 Frame = +2

Query: 110 MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIXXXXXXXXX 289
           MK  + G N +V+A+ V +L++ G E+++E     + +R +NA +SA   I         
Sbjct: 1   MKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGSISFKRSMFEV 60

Query: 290 XXXXXXXTEDNEGLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHG 469
                     +    CKISMK  L  F++      +VE  E+ L      L   L+CK  
Sbjct: 61  YDMPP-----HSDFYCKISMKGCLAVFRNM----NEVEYCELNLLDNQTNLQVNLRCKLE 111

Query: 470 IVKTHFVSILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEATTKSLVI 649
             K   +SI+D + +      D +PN I    ++L +  N+F +S++++TLEA + S+V 
Sbjct: 112 TTKEATISIIDDQNINTNINTDQMPNIIRGDHKLLTDISNNFNSSEEELTLEANSGSVVA 171

Query: 650 KNYID 664
           KNYI+
Sbjct: 172 KNYIE 176


>AE014296-3070|AAF49221.1|  456|Drosophila melanogaster CG3945-PA
           protein.
          Length = 456

 Score = 88.6 bits (210), Expect = 7e-18
 Identities = 55/185 (29%), Positives = 92/185 (49%)
 Frame = +2

Query: 110 MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIXXXXXXXXX 289
           MK  + G N +V+A+ V +L++ G E+++E     + +R +NA +SA   I         
Sbjct: 1   MKYTLEGSNARVIAKAVQSLSKVGKEMFIEIDQQSLQMRAINATQSAVGSISFKRSMFEV 60

Query: 290 XXXXXXXTEDNEGLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHG 469
                     +    CKISMK  L  F++      +VE  E+ L      L   L+CK  
Sbjct: 61  YDMPP-----HSDFYCKISMKGCLAVFRNM----NEVEYCELNLLDNQTNLQVNLRCKLE 111

Query: 470 IVKTHFVSILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEATTKSLVI 649
             K   +SI+D + +      D +PN I    ++L +  N+F +S++++TLEA + S+V 
Sbjct: 112 TTKEATISIIDDQNINTNINTDQMPNIIRGDHKLLTDISNNFNSSEEELTLEANSGSVVA 171

Query: 650 KNYID 664
           KNYI+
Sbjct: 172 KNYIE 176


>BT022159-1|AAY51785.1| 1224|Drosophila melanogaster IP01381p
           protein.
          Length = 1224

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +2

Query: 545 NRITSPQRILNETLNSFQTSDDQVTLEATTKSLVIKNYI 661
           ++++S Q+ +++     Q S  Q  + A T+++VIKNY+
Sbjct: 790 HQVSSHQQHVHQQQQQQQQSQQQYLVSAPTRTIVIKNYM 828


>BT009981-1|AAQ22450.1| 1281|Drosophila melanogaster RE54443p
           protein.
          Length = 1281

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +2

Query: 545 NRITSPQRILNETLNSFQTSDDQVTLEATTKSLVIKNYI 661
           ++++S Q+ +++     Q S  Q  + A T+++VIKNY+
Sbjct: 847 HQVSSHQQHVHQQQQQQQQSQQQYLVSAPTRTIVIKNYM 885


>AE014298-704|AAS65261.1| 1281|Drosophila melanogaster CG32767-PB,
           isoform B protein.
          Length = 1281

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +2

Query: 545 NRITSPQRILNETLNSFQTSDDQVTLEATTKSLVIKNYI 661
           ++++S Q+ +++     Q S  Q  + A T+++VIKNY+
Sbjct: 847 HQVSSHQQHVHQQQQQQQQSQQQYLVSAPTRTIVIKNYM 885


>AE014298-703|AAF46005.2| 1281|Drosophila melanogaster CG32767-PA,
           isoform A protein.
          Length = 1281

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +2

Query: 545 NRITSPQRILNETLNSFQTSDDQVTLEATTKSLVIKNYI 661
           ++++S Q+ +++     Q S  Q  + A T+++VIKNY+
Sbjct: 847 HQVSSHQQHVHQQQQQQQQSQQQYLVSAPTRTIVIKNYM 885


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,507,862
Number of Sequences: 53049
Number of extensions: 489207
Number of successful extensions: 938
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)