Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f12
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-20|CAC42372.2|  497|Caenorhabditis elegans Hypothetical...    43   2e-04
AF247970-1|AAF66431.1|  323|Caenorhabditis elegans cell cycle ch...    38   0.007
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    27   9.8  
U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AL031633-20|CAC42372.2|  497|Caenorhabditis elegans Hypothetical
           protein Y39A1A.23 protein.
          Length = 497

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 35/177 (19%), Positives = 77/177 (43%), Gaps = 2/177 (1%)
 Frame = +2

Query: 134 NVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIXXXXXXXXXXXXXXXXT 313
           N+K+++R++  L++  +++ +E     +  +T+N ++                       
Sbjct: 11  NLKIMSRSIAALSKISEDVLIEVSEGGLFFKTVNRSKFCVFRFAPEFFNACDVSMINKKA 70

Query: 314 EDNEGLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHGIVKTHFVS 493
            +     C++SMKSA   FK  A  +K     E ++DP++ +++  L+  + I +T    
Sbjct: 71  VNI----CRLSMKSAQRIFKGVAFGEKNFVGCEFRIDPKAERMMVKLQMNYDIERTIHAK 126

Query: 494 ILDCKAM--QAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEATTKSLVIKNY 658
           + +  +M  +  Y +    N IT         +      D +VT++ T   L I+N+
Sbjct: 127 LREMGSMLHKPTYNRSGCRN-ITVVFASTLLPIFVQMKGDIEVTMKVTDDGLTIRNF 182


>AF247970-1|AAF66431.1|  323|Caenorhabditis elegans cell cycle
           checkpoint protein Rad9 protein.
          Length = 323

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 22/112 (19%), Positives = 52/112 (46%)
 Frame = +2

Query: 134 NVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIXXXXXXXXXXXXXXXXT 313
           N+K+++R++  L++  +++ +E     +  +T+N ++                       
Sbjct: 11  NLKIMSRSIAALSKISEDVLIEVSEGGLFFKTVNRSKFCVFRFAPEFFNACDVSMINKKA 70

Query: 314 EDNEGLKCKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHG 469
            +     C++SMKSA   FK  A  +K     E ++DP++ +++  L+  +G
Sbjct: 71  VNI----CRLSMKSAQRIFKGVAFGEKNFVGCEFRIDPKAERMMVKLQMNYG 118


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
           complex protein protein12 protein.
          Length = 1847

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 383 HIDKQVESLEMKLDPESCKLIFCLKCKHGIVKTHFVSILDCK 508
           HID+Q   ++ K +  +  L+  LK     ++T FV+I+D K
Sbjct: 377 HIDEQFLHVDFKSENGTWFLVTPLKPSKTTLRTKFVAIIDAK 418


>U40946-3|AAO91681.1|  851|Caenorhabditis elegans Hypothetical
           protein W05H9.2 protein.
          Length = 851

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 386 IDKQVESLEMKLDPESCKLIFCLKCKHGIVKTHFV 490
           +DK +++ E KL  + C+++  LK + G+ KT  V
Sbjct: 317 LDKALQTNETKLRQDFCRILKILKKERGLDKTRAV 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,158,644
Number of Sequences: 27780
Number of extensions: 268634
Number of successful extensions: 620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)