Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f12
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05480.1 68416.m00600 cell cycle checkpoint control protein f...    59   2e-09
At4g23885.1 68417.m03435 expressed protein                             28   6.9  
At2g05920.1 68415.m00642 subtilase family protein contains simil...    28   6.9  
At3g45470.1 68416.m04910 zinc finger protein-related contains lo...    27   9.1  

>At3g05480.1 68416.m00600 cell cycle checkpoint control protein
           family contains Pfam profile PF04139: Rad9; contains
           Prosite PS00976: Myristoyl-CoA:protein
           N-myristoyltransferase signature 2; similar to
           radio-resistance/chemo-resistance/cell cycle checkpoint
           control protein (GI:3869274) [Mus musculus]
          Length = 439

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
 Frame = +2

Query: 110 MKCHVPGPNVKVLARTVHTLARFGDELYLESLPDCILLRTLNAAESAYAMIXXXXXXXXX 289
           M+  + G  +K L+R++  LAR G+EL +++ P  + L TLNA+ SAY  I         
Sbjct: 1   MELSISGNALKTLSRSIICLARVGNELVVQASPTQLALHTLNASRSAYQCI------TFQ 54

Query: 290 XXXXXXXTEDNEGLKCKISMKSALNAFKSP-AHIDKQVESLEMKLDPESCKLIFCLKCKH 466
                  T         + +K+  +  ++P A ID     L    D ++ K+ + L+C  
Sbjct: 55  SSFFDVYTVSGPQAHFSVLLKAVCSVLRTPLASIDHMSVQLP---DHDASKVKWTLQCYS 111

Query: 467 GIVKTHFVSI-LDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEATTKS 640
           G+ KT++++  ++         +   P+ +    R L++ L +FQ+S  ++T+ AT ++
Sbjct: 112 GMKKTYWITCNVEPDIQHLSLDRGRFPSTLVMHPRNLSKLLGNFQSSLQEITIIATDQT 170


>At4g23885.1 68417.m03435 expressed protein
          Length = 77

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 249 ADSAAFNVLNNIQSGNDSRYNSSPNRAKVCTVLAKTLTLG 130
           AD+  F+ LNNIQ     + +S P R  V     + + LG
Sbjct: 35  ADTLFFSNLNNIQKTTGGKASSQPKRTPVSNEEMEAILLG 74


>At2g05920.1 68415.m00642 subtilase family protein contains
           similarity to cucumisin-like serine protease GI:3176874
           from [Arabidopsis thaliana]
          Length = 754

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 252 YADSAAFNVLNNIQSG---NDSRYNSSPNRAKVCTVLAKTLTLGPGT 121
           Y D+ A    + ++ G   + S  NS P RA V  V    +T+G GT
Sbjct: 286 YRDTIAIGAFSAMERGVFVSCSAGNSGPTRASVANVAPWVMTVGAGT 332


>At3g45470.1 68416.m04910 zinc finger protein-related contains low
           similarity to Swiss-Prot:O76924 ariadne-2 protein
           (Ari-2) [Drosophila melanogaster]
          Length = 222

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 329 LKCKISMKSALNAFK-SPAHIDKQVESLEMKLDPESCKLIFCLKCKHGIVKTHFVSILDC 505
           + CK+   S L+  +    H D  ++ L +KL     K   C+KC+H I      + + C
Sbjct: 126 IDCKVPWHSDLSCAEYKKLHPDPVLDDLTLKLLANDQKWRQCVKCRHLIELNQGCNHMTC 185

Query: 506 K 508
           +
Sbjct: 186 R 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,976,763
Number of Sequences: 28952
Number of extensions: 236482
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)