Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f11
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395...    30   1.5  
08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603     29   2.6  
05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914...    29   2.6  
05_06_0156 - 26031463-26031572,26031961-26032039,26032133-260322...    29   2.6  
01_01_0201 + 1746088-1747086,1748735-1748806,1750106-1750168,175...    29   4.6  
05_05_0275 - 23762905-23762995,23763775-23763841,23763925-237639...    28   6.0  
10_07_0114 + 13005620-13005976                                         28   8.0  
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950...    28   8.0  

>12_02_0065 -
           13109652-13110746,13110843-13111762,13139462-13139528,
           13139607-13139675,13139877-13140020,13140100-13140171,
           13140316-13140387,13140466-13140558,13140655-13140726,
           13140809-13140925
          Length = 906

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 276 SFIKTSRSYRCLYIHTSIIPSNICSIHNSVNCHKRIPTGPRN-GSTNSGVVY 428
           SF+    SY  ++++   IP         + CH R+P G RN G+T + +VY
Sbjct: 490 SFLDAYSSYHQIHMNPPDIPKTAFITLLGIFCHLRMPFGLRNAGATFARLVY 541


>08_02_0862 + 21979932-21980057,21982221-21982289,21982394-21982603
          Length = 134

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
 Frame = +3

Query: 501 NDVVPAVYKIYDNPIRV*RDSSDY---LCHISSQYF---RSSSHASC-TMVYGEEIENVR 659
           N ++P+ Y++ D+   V RD+ +    +CH+S  ++   R +   SC T    ++  +V 
Sbjct: 57  NRMIPSRYQVSDDFNHVSRDTHEVSCDICHVSDDFYHVSRDTREVSCDTCQVSDDFYHVS 116

Query: 660 KDCPDTTD 683
           +D  + +D
Sbjct: 117 RDTCEVSD 124


>05_07_0004 +
           26990250-26990516,26990877-26990931,26991286-26991461,
           26991702-26991923,26992001-26992239,26992437-26992962,
           26993042-26993315,26993391-26994009,26994082-26994121,
           26994263-26994310,26994548-26994814,26994892-26995155,
           26995260-26995904
          Length = 1213

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 370 VTNGFLQGLGMGLLIPVSYTSFNSYFTKKKVLYLSLCKASIGLITMLYPLFI 525
           V  GF+QG GMG L  + ++SF         L LS   +   ++ +L+ + I
Sbjct: 266 VKEGFIQGFGMGFLNLIYFSSFGLIVWYGSKLSLSRGYSGADIMNILFGIMI 317


>05_06_0156 -
           26031463-26031572,26031961-26032039,26032133-26032261,
           26032362-26032559,26032741-26032900,26032980-26033147,
           26033290-26033405,26033491-26033586,26033675-26034058,
           26035150-26035572,26037202-26037315,26037969-26038017,
           26038103-26038262,26038345-26039014
          Length = 951

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 424 YTSFNSYFTKKKVLYLSLCKASIGL--ITMLYPLFIKFTITQYGFRGTL 564
           Y     YF + K  YL+L K   G+  + ML  + I FT+    FR +L
Sbjct: 505 YAPLGKYFGETKPTYLTLVKGVEGITGVIMLVCMIIAFTLATRWFRRSL 553


>01_01_0201 +
           1746088-1747086,1748735-1748806,1750106-1750168,
           1750355-1750489,1750604-1750669
          Length = 444

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 525 KIYDNPIRV*RDSSDYLCHISSQYFRSSSHASCTMVYGEEIENVRKDCPDTTDA 686
           +IY NP RV   S   +  ++ Q + +++       YGE+  +  + CP TT A
Sbjct: 359 RIYTNPARVLTGS---MLRVADQEYTTATIPLAIAAYGEDKTSKSQTCPYTTTA 409


>05_05_0275 -
           23762905-23762995,23763775-23763841,23763925-23763976,
           23764966-23765124
          Length = 122

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 79  GWGYVVCVGLSVIFIAGTAHQ 141
           GWG VV   L+ + +AGT H+
Sbjct: 67  GWGAVVVAELTALIVAGTVHR 87


>10_07_0114 + 13005620-13005976
          Length = 118

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 244 AGFSANIALKSLSLRQVGLIGAFIYTLASFLAIFVVSTTQ 363
           AG++    + S  ++QVG     +Y LA  ++++ VST+Q
Sbjct: 26  AGYTTAEDVSSDFIKQVGKFAVTVYKLARGVSLYYVSTSQ 65


>07_03_1342 -
           25891761-25892102,25892588-25893135,25893342-25895012,
           25895818-25896745
          Length = 1162

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 292 VGLIGAFIYTLASFLAIFVVSTTQLIVTNGF 384
           VG IGA +  +   LAI+VV + +L   NGF
Sbjct: 607 VGCIGAALLVIFIALAIYVVRSQELCGRNGF 637


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,946,210
Number of Sequences: 37544
Number of extensions: 326937
Number of successful extensions: 723
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)