Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f11
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    29   0.055
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    29   0.055
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.3  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 0.055
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 201 RYSCIWSVSSHISYCRFFGEHSFEKSFIKTSRSYRCLYI-HTSIIPSNICSIH 356
           R S +    S +S C  FG      SF++T    +  Y  HT II  ++C  H
Sbjct: 2   RASSVLQAESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRH 54


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 0.055
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 201 RYSCIWSVSSHISYCRFFGEHSFEKSFIKTSRSYRCLYI-HTSIIPSNICSIH 356
           R S +    S +S C  FG      SF++T    +  Y  HT II  ++C  H
Sbjct: 2   RASSVLQAESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRH 54


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +1

Query: 448 TKKKVLYLSLCKASIGLITMLYPLFIKFTITQYGFRGTLAIICAISAHSIF 600
           T K ++ +  C+A+  +  + YP  +   I  Y  RG  +    +S   I+
Sbjct: 19  TAKAIIGVDECQATPVIHFLQYPGCVPKPIPSYACRGRCSSYLQVSGSKIW 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,699
Number of Sequences: 438
Number of extensions: 4038
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)