BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmmt10f11 (687 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g49740.1 68418.m06159 ferric reductase-like transmembrane com... 35 0.044 At2g16770.1 68415.m01923 expressed protein 31 0.95 At5g51660.1 68418.m06405 cleavage and polyadenylation specificit... 27 8.8 At4g12360.1 68417.m01954 protease inhibitor/seed storage/lipid t... 27 8.8 >At5g49740.1 68418.m06159 ferric reductase-like transmembrane component family protein similar to ferric-chelate reductase (FRO1) [Pisum sativum] GI:15341529; contains Pfam profile PF01794: Ferric reductase like transmembrane componenent Length = 747 Score = 35.1 bits (77), Expect = 0.044 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%) Frame = +1 Query: 463 LYLSLCKAS-IGLITMLYPLFI-KFTITQYGFRGTLAIICAISAHSIFGALVMHPVQWY 633 LYL + I +IT++ +I K+ IT + ++G L ++C +++ IFG LV+ V W+ Sbjct: 579 LYLIISTIGFIAMITLVDIFYINKYNITTWWYKGLLFVVCMVASVLIFGGLVV--VFWH 635 >At2g16770.1 68415.m01923 expressed protein Length = 249 Score = 30.7 bits (66), Expect = 0.95 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +3 Query: 285 KTSRSYRCLYIHTSIIPSNICSIHNSVNCHKRIPTGPR 398 + + ++ CL++HT I+P + + S + K+ P G R Sbjct: 48 ENTHTHTCLHVHTKILPDKVSTDDTSESSGKKRPLGNR 85 >At5g51660.1 68418.m06405 cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein similar to SP|Q9EPU4 Cleavage and polyadenylation specificity factor, 160 kDa subunit (CPSF 160 kDa subunit) {Mus musculus}; contains Pfam profile PF03178: CPSF A subunit region Length = 1442 Score = 27.5 bits (58), Expect = 8.8 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +1 Query: 574 CAISAHSIFGALVMHPVQWYMVKKLKTCEKIVLIP 678 C +SA SI L HPV W + K++ +P Sbjct: 284 CVLSALSINSTLKQHPVIWSAINLPHDAYKLLAVP 318 >At4g12360.1 68417.m01954 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 Length = 161 Score = 27.5 bits (58), Expect = 8.8 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +1 Query: 337 AIFVVSTTQLIVTNGFLQGLGMGLLIPVSYTSFNSYFTK 453 A+ TTQL GF++ LLIP + T FN+ F+K Sbjct: 66 AVETALTTQLSCLCGFIKS--PMLLIPFNVTDFNALFSK 102 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,101,946 Number of Sequences: 28952 Number of extensions: 282321 Number of successful extensions: 715 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 696 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 715 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1457719448 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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