Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f11
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49740.1 68418.m06159 ferric reductase-like transmembrane com...    35   0.044
At2g16770.1 68415.m01923 expressed protein                             31   0.95 
At5g51660.1 68418.m06405 cleavage and polyadenylation specificit...    27   8.8  
At4g12360.1 68417.m01954 protease inhibitor/seed storage/lipid t...    27   8.8  

>At5g49740.1 68418.m06159 ferric reductase-like transmembrane
           component family protein similar to ferric-chelate
           reductase (FRO1) [Pisum sativum] GI:15341529; contains
           Pfam profile PF01794: Ferric reductase like
           transmembrane componenent
          Length = 747

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = +1

Query: 463 LYLSLCKAS-IGLITMLYPLFI-KFTITQYGFRGTLAIICAISAHSIFGALVMHPVQWY 633
           LYL +     I +IT++   +I K+ IT + ++G L ++C +++  IFG LV+  V W+
Sbjct: 579 LYLIISTIGFIAMITLVDIFYINKYNITTWWYKGLLFVVCMVASVLIFGGLVV--VFWH 635


>At2g16770.1 68415.m01923 expressed protein
          Length = 249

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 285 KTSRSYRCLYIHTSIIPSNICSIHNSVNCHKRIPTGPR 398
           + + ++ CL++HT I+P  + +   S +  K+ P G R
Sbjct: 48  ENTHTHTCLHVHTKILPDKVSTDDTSESSGKKRPLGNR 85


>At5g51660.1 68418.m06405 cleavage and polyadenylation specificity
           factor (CPSF) A subunit C-terminal domain-containing
           protein similar to SP|Q9EPU4 Cleavage and
           polyadenylation specificity factor, 160 kDa subunit
           (CPSF 160 kDa subunit) {Mus musculus}; contains Pfam
           profile PF03178: CPSF A subunit region
          Length = 1442

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 574 CAISAHSIFGALVMHPVQWYMVKKLKTCEKIVLIP 678
           C +SA SI   L  HPV W  +       K++ +P
Sbjct: 284 CVLSALSINSTLKQHPVIWSAINLPHDAYKLLAVP 318


>At4g12360.1 68417.m01954 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 161

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 337 AIFVVSTTQLIVTNGFLQGLGMGLLIPVSYTSFNSYFTK 453
           A+    TTQL    GF++     LLIP + T FN+ F+K
Sbjct: 66  AVETALTTQLSCLCGFIKS--PMLLIPFNVTDFNALFSK 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,101,946
Number of Sequences: 28952
Number of extensions: 282321
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)