Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f07
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    62   6e-11
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    29   0.39 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.1  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   6.3  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   6.3  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   8.4  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.4  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 62.1 bits (144), Expect = 6e-11
 Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
 Frame = +3

Query: 261 RLPERYGAGEKSVWVEYIQLAAEYK-PAVNLGQGFPDYHAPKHVTEALSQIATSENPLLH 437
           R   +  A    VW    Q  AE K P V+L QGF +Y+ PK V +A  +  + +    +
Sbjct: 7   RPSNKVAASRPDVWTLVNQATAECKVPPVSLSQGFFNYNPPKFVLDAAKK--SIDEVACN 64

Query: 438 QYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYS 572
           QY+   G P L + LS+ YSP   R ++   EI+VT+GA E  +S
Sbjct: 65  QYSHTRGRPSLRKALSEAYSPYFKRTLNPDTEIVVTAGANEGFFS 109


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 369 YHAPKHVTEALSQIATSENP-LLHQYTRGFGLPRLVENLSKVYSPLIGRQ 515
           Y  P  +T+ L  I +SEN  L+HQ  R  GLP+ +E    +Y+P   RQ
Sbjct: 604 YWDPFMITD-LKFIGSSENAELIHQRLRN-GLPKSIEKGPFIYNPFNRRQ 651


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 429 LLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTS 548
           LL    RG G  R  E+L K   PL+   ++AFN +L+++
Sbjct: 720 LLRALFRGIGGGRF-ESLYKEVMPLLHALLEAFNSLLISA 758


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 402 SQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEIL 539
           S + T  N L    T  FG   L   +  V + L+ R+I+ F E+L
Sbjct: 460 STLNTFMNELNSSMTSAFGDTFLASTVQNVMNCLLYRKIENFEEVL 505


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 188 SIEECENRTFYSTIECLSYNGRKVSI 265
           SIEEC     Y+  + L Y G +V +
Sbjct: 294 SIEECAKLNIYTAQQALEYIGARVKV 319


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 294 FSHQLHNVPAIETFLPLYD 238
           + H LH V A E F P YD
Sbjct: 254 YYHNLHRVGAFEPFDPYYD 272


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 399  LSQIATSEN--PLLHQYTRGFGLPRLV-ENLSKVYSPLIGRQ 515
            L QI ++ +  PLLH Y    GL +++ EN + V+  L+ +Q
Sbjct: 1220 LDQIISTNSIAPLLHSYLADIGLYQMIFENFAYVHPWLLRQQ 1261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,026
Number of Sequences: 5004
Number of extensions: 49017
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)