Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f07
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591     68   5e-12
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977...    42   3e-04
03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268     28   4.9  
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...    27   8.6  

>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
          Length = 455

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 40/124 (32%), Positives = 68/124 (54%)
 Frame = +3

Query: 222 RQLSVCRTMAEKFRLPERYGAGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPKHVTEAL 401
           +Q  V  T+     + +R    + +++ +   LA ++  A+NLGQGFP++  P  V EA 
Sbjct: 59  QQQPVQSTLGPGVTVAKRLEKFKTTIFTQMSMLAIKHG-AINLGQGFPNFDGPDFVKEAA 117

Query: 402 SQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTIL 581
            Q   +     +QY RG+G+P L   +++ +    G Q+D   E+ VTSG  EA+ +TIL
Sbjct: 118 IQAINAGK---NQYARGYGVPELNSAIAERFLKDSGLQVDPEKEVTVTSGCTEAIAATIL 174

Query: 582 GHVD 593
           G ++
Sbjct: 175 GLIN 178


>10_08_0422 -
           17796916-17797167,17797328-17797453,17797546-17797700,
           17797793-17797907,17798022-17798118,17798274-17798368,
           17798500-17798585,17798689-17798819,17798909-17799090
          Length = 412

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
 Frame = +3

Query: 303 VEYIQLAAEYKPAVNLGQGFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGL-PRLVEN 479
           ++ +   A+   AVNL +GFPD+ AP HV  A +    ++   L+QY    G+   L E 
Sbjct: 17  IQQLSHLAQRAGAVNLAEGFPDFPAPAHVKAAAAAAIAAD---LNQYRHVQGICDALAET 73

Query: 480 LSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVD 593
           + + +    G ++D   +  V  G  EA  + I   +D
Sbjct: 74  MKRDH----GLRVDPLTDFAVCCGQSEAFAAAIFAIID 107


>03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268
          Length = 574

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 315 VCTQPIRFSHQLHNVPAIETFLPL 244
           +C  P+ F++ L N PA ETFLPL
Sbjct: 294 MCAAPVVFNN-LINAPASETFLPL 316


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 424 IHCFISTQEALVCRASWRIYQRFTLR 501
           +HCF+S Q A + R  W   +RF  R
Sbjct: 19  LHCFLSLQTARLPRDDWASEERFQSR 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,870,230
Number of Sequences: 37544
Number of extensions: 299590
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)