Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10f07
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12) 59 2e-09
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2) 29 3.8
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21) 29 3.8
SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7) 28 5.0
SB_47439| Best HMM Match : E6 (HMM E-Value=3.2) 28 6.6
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_10674| Best HMM Match : E6 (HMM E-Value=3.2) 28 6.6
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 27 8.7
SB_19970| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_24502| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18) 27 8.7
>SB_31612| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.8e-12)
Length = 398
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/62 (45%), Positives = 40/62 (64%)
Frame = +3
Query: 357 GFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEI 536
GFPD H+ AL + A+S+N L QYTR G PRLV L+ +Y+ L GR+I+A E+
Sbjct: 101 GFPDIAPESHIKAALIEAASSDNVALCQYTRSEGHPRLVNALAAMYTKLQGREINALTEV 160
Query: 537 LV 542
++
Sbjct: 161 IL 162
>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
Length = 1037
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 453 FGLPRLVENLSKVYSPLIGRQIDAFNEILVTSG 551
F P L+ L+K+ + G+Q++ +IL TSG
Sbjct: 156 FAAPNLLAQLAKLLDFIHGKQVEELEDILSTSG 188
>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
Length = 595
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 455 WSAAPRGESIKGLLSADWTTDRC 523
WS+ PR + I+GLLS D T C
Sbjct: 173 WSSTPRPKLIEGLLSVDVTAVSC 195
>SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)
Length = 856
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +3
Query: 309 YIQLAAEYKPAVNLGQGFPDYHAPKHVTEALSQIATSENP----LLHQYTR 449
YI++ Y+P + +PD P H + S+ TSE P L+HQ R
Sbjct: 708 YIEIPGYYQPCTSKTSAYPDIQIPGHFQPSSSK--TSEYPGTINLVHQRHR 756
>SB_47439| Best HMM Match : E6 (HMM E-Value=3.2)
Length = 436
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 299 YAFLTSSITFRQSKLFCHCTTNTQLSNKMFYF 204
YA+L ++ T + + C T TQL+ ++F++
Sbjct: 191 YAYLVANFTEPAATSYAACRTATQLTRRVFFY 222
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 374 RTETCNRSTIADSYQ*KSTASSVHKRLWSAAPRGESIKGLLS 499
R E+C + T+ + + ++ +S + +AAPRG S +G S
Sbjct: 86 RNESCVKKTVQPTSEETTSTASTIAQTSTAAPRGSSTEGRTS 127
>SB_10674| Best HMM Match : E6 (HMM E-Value=3.2)
Length = 436
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 299 YAFLTSSITFRQSKLFCHCTTNTQLSNKMFYF 204
YA+L ++ T + + C T TQL+ ++F++
Sbjct: 191 YAYLVANFTEPAATSYAACRTATQLTRRVFFY 222
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 378 PKHVTEALSQ-IATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQID-AFNEIL 539
P ALSQ + + NP L Q+ + P L + + Y+P + +Q+ A+N L
Sbjct: 41 PLAYNPALSQQVKLAYNPALSQHVKLLYNPALSQQVKLAYNPALSQQVKLAYNPAL 96
>SB_19970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 192 SRSVKIEHFIRQLSVCRTMAE--KFRLPERYGAGEKSVWVEYIQLAAEYKPAV 344
S S + I+ SVC TM K + R GA ++W +YI + + PA+
Sbjct: 15 SASAGTTYNIKVQSVCDTMNNFNKLLITMRSGADTDAIWGDYILPSVKIHPAL 67
>SB_24502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 378 PKHVTEALSQ-IATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQID-AFNEIL 539
P ALSQ + + NP L Q+ + P L + + Y+P + +Q+ A+N L
Sbjct: 35 PLAYNPALSQQVKLAYNPALSQHVKLLYNPALSQQVKLAYNPALSQQVKLAYNPAL 90
>SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18)
Length = 817
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 515 DRCLQ*NPSHERCL*STLLYHFRSR 589
D C++ NP H R L S ++H+ R
Sbjct: 791 DECVEQNPFHRRVLKSAAVHHYSQR 815
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,756,671
Number of Sequences: 59808
Number of extensions: 357194
Number of successful extensions: 713
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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