Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f07
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77670.1 68414.m09043 aminotransferase class I and II family ...    60   1e-09
At2g22250.2 68415.m02642 aminotransferase class I and II family ...    33   0.19 
At2g22250.1 68415.m02641 aminotransferase class I and II family ...    33   0.19 
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi...    29   2.4  
At5g65970.1 68418.m08305 seven transmembrane MLO family protein ...    29   3.1  
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ...    27   7.2  
At5g18940.2 68418.m02250 Mo25 family protein similar to SP|Q0613...    27   9.5  
At5g18940.1 68418.m02249 Mo25 family protein similar to SP|Q0613...    27   9.5  

>At1g77670.1 68414.m09043 aminotransferase class I and II family
           protein similar to kynurenine aminotransferase
           /glutamine transaminase K GI:1030066 [Rattus norvegicus]
          Length = 440

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 31/85 (36%), Positives = 48/85 (56%)
 Frame = +3

Query: 339 AVNLGQGFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQI 518
           A+NLGQGFP++  P  V EA  Q         +QY RG+G+P+L   ++  +    G  +
Sbjct: 81  AINLGQGFPNFDGPDFVKEAAIQAIKDGK---NQYARGYGIPQLNSAIAARFREDTGLVV 137

Query: 519 DAFNEILVTSGAYEALYSTILGHVD 593
           D   E+ VTSG  EA+ + +LG ++
Sbjct: 138 DPEKEVTVTSGCTEAIAAAMLGLIN 162


>At2g22250.2 68415.m02642 aminotransferase class I and II family
           protein similar to aspartate aminotransferase from
           Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
           SP|O33822; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 475

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 26/82 (31%), Positives = 39/82 (47%)
 Frame = +3

Query: 336 PAVNLGQGFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQ 515
           P + L  G PD+  PK V EA    A  E     +YT   G+  L E + +      G  
Sbjct: 100 PVIRLAAGEPDFDTPKVVAEA-GINAIREG--FTRYTLNAGITELREAICRKLKEENGLS 156

Query: 516 IDAFNEILVTSGAYEALYSTIL 581
             A ++ILV++GA ++L   +L
Sbjct: 157 Y-APDQILVSNGAKQSLLQAVL 177


>At2g22250.1 68415.m02641 aminotransferase class I and II family
           protein similar to aspartate aminotransferase from
           Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
           SP|O33822; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 428

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 26/82 (31%), Positives = 39/82 (47%)
 Frame = +3

Query: 336 PAVNLGQGFPDYHAPKHVTEALSQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQ 515
           P + L  G PD+  PK V EA    A  E     +YT   G+  L E + +      G  
Sbjct: 53  PVIRLAAGEPDFDTPKVVAEA-GINAIREG--FTRYTLNAGITELREAICRKLKEENGLS 109

Query: 516 IDAFNEILVTSGAYEALYSTIL 581
             A ++ILV++GA ++L   +L
Sbjct: 110 Y-APDQILVSNGAKQSLLQAVL 130


>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 836

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 213 HFIRQLSVCRTMAEKFRLPERYGAGEKSVWVEYIQLAAEYKPAVNLGQG 359
           +F+   + CR++  +F   E+ G+ E S W E ++   E    ++ G+G
Sbjct: 69  NFVGLTTQCRSIVRRF-CSEKIGSSESSGWTEEVEYLDESGSVLHSGKG 116


>At5g65970.1 68418.m08305 seven transmembrane MLO family protein /
           MLO-like protein 10 (MLO10) identical to membrane
           protein Mlo10 [Arabidopsis thaliana]
           gi|14091590|gb|AAK53803; similar to MLO protein
           SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
           vulgare][Barley]
          Length = 569

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -2

Query: 479 ILHEARQTKASCVLMKQWIFTGSYLR*CFCYMFRCVIVRKALTKVHGRLILCS*LYVLNP 300
           +LH A    A  +    W++    L+ CF   F+ VIV+ +L    G LILCS  Y+  P
Sbjct: 373 LLHFALFQNAFQLTYFFWVWYSFGLKSCFHTDFKLVIVKLSLGV--GALILCS--YITLP 428

Query: 299 -YAFLT 285
            YA +T
Sbjct: 429 LYALVT 434


>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
           similar to UV-damaged DNA binding protein (GI:12082087)
           [Oryza sativa] and damage-specific DNA binding protein
           1, Homo sapiens, PIR2:I38908; contains Pfam PF03178 :
           CPSF A subunit region
          Length = 1088

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 398 CFCYMFRCVIVRKALTKVHGRLILCS*LYVLNPYAFLTSSITFRQSK 258
           C    F+ + +R ++TK +GR+ L    Y+L  +A L   +     K
Sbjct: 240 CSANAFKAIPIRPSITKAYGRVDLDGSRYLLGDHAGLIHLLVITHEK 286


>At5g18940.2 68418.m02250 Mo25 family protein similar to SP|Q06138
           MO25 protein {Mus musculus}; contains Pfam profile
           PF03204: Mo25 protein family
          Length = 323

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 109 KARYLNMILNLLRHDSPDKNVNFFHVHK 26
           + RYL +I+ LL+  S +  ++ FH+ K
Sbjct: 233 EVRYLKVIMTLLKDSSKNIQISAFHIFK 260


>At5g18940.1 68418.m02249 Mo25 family protein similar to SP|Q06138
           MO25 protein {Mus musculus}; contains Pfam profile
           PF03204: Mo25 protein family
          Length = 345

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 109 KARYLNMILNLLRHDSPDKNVNFFHVHK 26
           + RYL +I+ LL+  S +  ++ FH+ K
Sbjct: 255 EVRYLKVIMTLLKDSSKNIQISAFHIFK 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,261,664
Number of Sequences: 28952
Number of extensions: 247775
Number of successful extensions: 466
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)