Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10f04
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   112   5e-26

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  112 bits (269), Expect = 5e-26
 Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
 Frame = +2

Query: 179 RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXXXRLSPNIEIGRIXPP 358
           RD+S E    G HT  V KGL+ G                       LSP  E+G + PP
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPP 128

Query: 359 SRITPX--NPFQIPLLNTIILIRSGVTVT*AHXSLIENNFSQXKQRXXXXXXXXXXXXXX 532
             I     +P ++PLLNT+IL+ SG ++T AH SLI  N     +               
Sbjct: 129 VGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGG 188

Query: 533 QA*EYXEASFTIADRIYGSTFFIATGFHGIHVIIGTLFXLI 655
           QA EY  A FTI+D +YG++F+ ATG HGIH+I+GT+  L+
Sbjct: 189 QAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLV 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,953
Number of Sequences: 5004
Number of extensions: 21285
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)